Migrated to Gentoo Science
https://gitweb.gentoo.org/proj/sci.git/commit/?id=67e6080551c80d384ee79713470e20396317a8f1
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Horea Christian
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a90f5579dd
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5413399633
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*pynwb-2.0.0_p0 (31 Jan 2022)
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31 Jan 2022; <chymera@gentoo.org> +files/pynwb-2.0.0-versions.patch,
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+pynwb-2.0.0_p0.ebuild, pynwb-2.0.0.ebuild:
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dev-python/pynwb: version bump and test skip linking skipped test reports on
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upstream issue treacker
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DIST pynwb-2.0.0.post0.dev5.tar.gz 450799 SHA256 28fdbca8611ee447f2bf30e78d7053626de6dfcf8368db4e01bea62db2f9566d SHA512 840a33cd0a2de5c491e785530e4dab589945015b9a60384ed127a27fbfe4c527b1b10d74a9ffe2a795a29c3bba65aafd007975973a2da68fca73bf71260b7b8b WHIRLPOOL 749958c8aadfdaa369239a8c1b25bb5dd2e27aee58a1cc477ea1b189543ab4178338c55781778ed70db596e97d9d355cbe87d3cba972355cf4762f609ff5194c
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DIST pynwb-2.0.0.tar.gz 450082 SHA256 c22c96dd255e69cee1835057d741613d52c2ea1c45b6a1ef7f87ebaa8a5055ad SHA512 4afc319fd9cce0c1e81589236237f9a28b69dd846d96849ae5cc554287a6dd124fd421f700736dbb714cfbe6f260e79f374d1dd63ee92c2776f5173654d61f9a WHIRLPOOL 0a14cb4e7369f52f40294265ea3af760161cbf14a81797f50b372f081f49e94d8a5d6d828e212eb9136b224afbee52ae6a8e299b52a7f10231d59c33c7225284
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diff --git a/setup.py b/tmp/setup.py
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index 39e75824..f7948f64 100755
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--- a/setup.py
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+++ b/setup.py
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@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
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schema_dir = 'nwb-schema/core'
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reqs = [
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- 'h5py>=2.9,<4',
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- 'hdmf>=3.1.1,<4',
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- 'numpy>=1.16,<1.22',
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- 'pandas>=1.0.5,<2',
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- 'python-dateutil>=2.7,<3',
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+ 'h5py',
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+ 'hdmf',
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+ 'numpy',
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+ 'pandas',
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+ 'python-dateutil',
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'setuptools'
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]
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<?xml version='1.0' encoding='UTF-8'?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>gentoo@chymera.eu</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<longdescription lang="en">
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PyNWB is a Python package for working with NWB files. It provides a
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high-level API for efficiently working with Neurodata stored in the NWB
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format. Neurodata Without Borders: Neurophysiology (NWB:N) is a project
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to develop a unified data format for cellular-based neurophysiology
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data, focused on the dynamics of groups of neurons measured under a
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large range of experimental conditions.
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</longdescription>
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</pkgmetadata>
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# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..10} )
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inherit distutils-r1
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DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
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HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
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SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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sci-libs/hdf5[ros3]
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dev-python/hdmf[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/pandas[${PYTHON_USEDEP}]
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dev-python/python-dateutil[${PYTHON_USEDEP}]
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"
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BDEPEND=""
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PATCHES=(
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"${FILESDIR}/${P}-versions.patch"
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)
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EPYTEST_DESELECT=(
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# Reported upsream:
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# https://github.com/dandi/dandischema/issues/87
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
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# Reported upstream and fixed in newer version:
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# https://github.com/NeurodataWithoutBorders/pynwb/issues/1412#issuecomment-934153799
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tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_dandi_read
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tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_read
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)
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distutils_enable_tests pytest
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# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..10} )
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inherit distutils-r1
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MY_PV="$(ver_cut 1-3).post$(ver_cut 5).dev5"
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MY_P="${PN}-${MY_PV}"
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DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
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HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
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SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/latest/${MY_P}.tar.gz"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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sci-libs/hdf5[ros3]
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dev-python/hdmf[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/pandas[${PYTHON_USEDEP}]
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dev-python/python-dateutil[${PYTHON_USEDEP}]
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"
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BDEPEND=""
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PATCHES=(
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"${FILESDIR}/${PN}-2.0.0-versions.patch"
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)
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S="${WORKDIR}/${MY_P}"
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EPYTEST_DESELECT=(
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# Reported upsream
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# https://github.com/dandi/dandischema/issues/87
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
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tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
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)
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distutils_enable_tests pytest
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