diff --git a/dev-python/pynwb/ChangeLog b/dev-python/pynwb/ChangeLog deleted file mode 100644 index 1eee46e..0000000 --- a/dev-python/pynwb/ChangeLog +++ /dev/null @@ -1,6 +0,0 @@ -*pynwb-2.0.0_p0 (31 Jan 2022) - - 31 Jan 2022; +files/pynwb-2.0.0-versions.patch, - +pynwb-2.0.0_p0.ebuild, pynwb-2.0.0.ebuild: - dev-python/pynwb: version bump and test skip linking skipped test reports on - upstream issue treacker diff --git a/dev-python/pynwb/Manifest b/dev-python/pynwb/Manifest deleted file mode 100644 index 55fd908..0000000 --- a/dev-python/pynwb/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST pynwb-2.0.0.post0.dev5.tar.gz 450799 SHA256 28fdbca8611ee447f2bf30e78d7053626de6dfcf8368db4e01bea62db2f9566d SHA512 840a33cd0a2de5c491e785530e4dab589945015b9a60384ed127a27fbfe4c527b1b10d74a9ffe2a795a29c3bba65aafd007975973a2da68fca73bf71260b7b8b WHIRLPOOL 749958c8aadfdaa369239a8c1b25bb5dd2e27aee58a1cc477ea1b189543ab4178338c55781778ed70db596e97d9d355cbe87d3cba972355cf4762f609ff5194c -DIST pynwb-2.0.0.tar.gz 450082 SHA256 c22c96dd255e69cee1835057d741613d52c2ea1c45b6a1ef7f87ebaa8a5055ad SHA512 4afc319fd9cce0c1e81589236237f9a28b69dd846d96849ae5cc554287a6dd124fd421f700736dbb714cfbe6f260e79f374d1dd63ee92c2776f5173654d61f9a WHIRLPOOL 0a14cb4e7369f52f40294265ea3af760161cbf14a81797f50b372f081f49e94d8a5d6d828e212eb9136b224afbee52ae6a8e299b52a7f10231d59c33c7225284 diff --git a/dev-python/pynwb/files/pynwb-2.0.0-versions.patch b/dev-python/pynwb/files/pynwb-2.0.0-versions.patch deleted file mode 100644 index d09c505..0000000 --- a/dev-python/pynwb/files/pynwb-2.0.0-versions.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git a/setup.py b/tmp/setup.py -index 39e75824..f7948f64 100755 ---- a/setup.py -+++ b/setup.py -@@ -19,11 +19,11 @@ print('found these packages:', pkgs) - schema_dir = 'nwb-schema/core' - - reqs = [ -- 'h5py>=2.9,<4', -- 'hdmf>=3.1.1,<4', -- 'numpy>=1.16,<1.22', -- 'pandas>=1.0.5,<2', -- 'python-dateutil>=2.7,<3', -+ 'h5py', -+ 'hdmf', -+ 'numpy', -+ 'pandas', -+ 'python-dateutil', - 'setuptools' - ] - diff --git a/dev-python/pynwb/metadata.xml b/dev-python/pynwb/metadata.xml deleted file mode 100644 index 99512b5..0000000 --- a/dev-python/pynwb/metadata.xml +++ /dev/null @@ -1,20 +0,0 @@ - - - - - gentoo@chymera.eu - Horea Christian - - - sci@gentoo.org - Gentoo Science Project - - - PyNWB is a Python package for working with NWB files. It provides a - high-level API for efficiently working with Neurodata stored in the NWB - format. Neurodata Without Borders: Neurophysiology (NWB:N) is a project - to develop a unified data format for cellular-based neurophysiology - data, focused on the dynamics of groups of neurons measured under a - large range of experimental conditions. - - diff --git a/dev-python/pynwb/pynwb-2.0.0.ebuild b/dev-python/pynwb/pynwb-2.0.0.ebuild deleted file mode 100644 index b0294a4..0000000 --- a/dev-python/pynwb/pynwb-2.0.0.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} ) -inherit distutils-r1 - -DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format " -HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb" -SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/${PV}/${P}.tar.gz" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86" - -RDEPEND=" - sci-libs/hdf5[ros3] - dev-python/hdmf[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - " -BDEPEND="" - -PATCHES=( - "${FILESDIR}/${P}-versions.patch" - ) - -EPYTEST_DESELECT=( - # Reported upsream: - # https://github.com/dandi/dandischema/issues/87 - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore - tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache - tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns - # Reported upstream and fixed in newer version: - # https://github.com/NeurodataWithoutBorders/pynwb/issues/1412#issuecomment-934153799 - tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_dandi_read - tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_read -) - -distutils_enable_tests pytest diff --git a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild b/dev-python/pynwb/pynwb-2.0.0_p0.ebuild deleted file mode 100644 index f1b704a..0000000 --- a/dev-python/pynwb/pynwb-2.0.0_p0.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -PYTHON_COMPAT=( python3_{8..10} ) -inherit distutils-r1 - -MY_PV="$(ver_cut 1-3).post$(ver_cut 5).dev5" -MY_P="${PN}-${MY_PV}" - -DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format " -HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb" -SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/latest/${MY_P}.tar.gz" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86" - -RDEPEND=" - sci-libs/hdf5[ros3] - dev-python/hdmf[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/python-dateutil[${PYTHON_USEDEP}] - " -BDEPEND="" - -PATCHES=( - "${FILESDIR}/${PN}-2.0.0-versions.patch" - ) - -S="${WORKDIR}/${MY_P}" - -EPYTEST_DESELECT=( - # Reported upsream - # https://github.com/dandi/dandischema/issues/87 - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common - tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore - tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache - tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns -) - -distutils_enable_tests pytest