Merge branch 'master' of github.com:TheChymera/overlay
This commit is contained in:
Horea Christian
commit
a78324ad15
|
|
@ -4,7 +4,7 @@
|
|||
|
||||
EAPI=6
|
||||
|
||||
PYTHON_COMPAT=( python2_7 )
|
||||
PYTHON_COMPAT=( python{2_7,3_4,3_5} )
|
||||
|
||||
inherit distutils-r1 git-r3 multilib
|
||||
|
||||
|
|
|
|||
|
|
@ -0,0 +1 @@
|
|||
DIST graph-tool-2.19.tar.bz2 15147961 SHA256 eba1090f94b0434890beedaf0c100dd0fc77e41ebfe29b4725d76cadb82099af SHA512 dc0bd93ccf21bb6616035dbfe33b0d9406eb894791e615795d486dc8f9d9991a6b93cf835cf4e59197005c14faedf105f3384cccd42db544104840cf857b2a84 WHIRLPOOL 3a398c98487a1e29952fea4c3ff8671e5aaf3d4f9e8df26aae9f6a856e61c290954f4c662e48ae424cbe0b916833a8f3bc7a6eefe6c6c3a08540de58ed6b9de0
|
||||
|
|
@ -0,0 +1,83 @@
|
|||
# Copyright 1999-2016 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=6
|
||||
|
||||
PYTHON_COMPAT=( python2_7 python3_{4,5} )
|
||||
|
||||
inherit check-reqs toolchain-funcs python-r1
|
||||
|
||||
if [[ ${PV} == "9999" ]] ; then
|
||||
EGIT_REPO_URI="https://github.com/count0/graph-tool.git"
|
||||
inherit autotools git-r3
|
||||
else
|
||||
SRC_URI="http://downloads.skewed.de/${PN}/${P}.tar.bz2"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
fi
|
||||
|
||||
DESCRIPTION="An efficient python module for manipulation and statistical analysis of graphs"
|
||||
HOMEPAGE="http://graph-tool.skewed.de/"
|
||||
|
||||
LICENSE="GPL-3"
|
||||
SLOT="0"
|
||||
IUSE="+cairo openmp"
|
||||
|
||||
RDEPEND="${PYTHON_DEPS}
|
||||
dev-libs/boost:=[python,${PYTHON_USEDEP}]
|
||||
dev-libs/expat
|
||||
dev-python/numpy[${PYTHON_USEDEP}]
|
||||
sci-libs/scipy[${PYTHON_USEDEP}]
|
||||
sci-mathematics/cgal
|
||||
cairo? (
|
||||
dev-cpp/cairomm
|
||||
dev-python/pycairo[${PYTHON_USEDEP}]
|
||||
)
|
||||
dev-python/matplotlib[${PYTHON_USEDEP}]"
|
||||
DEPEND="${RDEPEND}
|
||||
dev-cpp/sparsehash
|
||||
virtual/pkgconfig"
|
||||
|
||||
# bug 453544
|
||||
CHECKREQS_DISK_BUILD="6G"
|
||||
|
||||
pkg_pretend() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp \
|
||||
|| die "Please switch to an openmp compatible compiler"
|
||||
check-reqs_pkg_pretend
|
||||
}
|
||||
|
||||
pkg_setup() {
|
||||
[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp \
|
||||
|| die "Please switch to an openmp compatible compiler"
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
[[ ${PV} == "9999" ]] && eautoreconf
|
||||
python_copy_sources
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
local threads
|
||||
has_version "dev-libs/boost[threads]" && threads="-mt"
|
||||
|
||||
configure() {
|
||||
econf \
|
||||
--disable-static \
|
||||
--disable-optimization \
|
||||
$(use_enable openmp) \
|
||||
$(use_enable cairo) \
|
||||
--with-boost-python="${EPYTHON: -3}${threads}"
|
||||
}
|
||||
python_foreach_impl run_in_build_dir configure
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
python_foreach_impl run_in_build_dir emake -j1 || die "emake failed"
|
||||
}
|
||||
|
||||
src_install() {
|
||||
python_foreach_impl run_in_build_dir default
|
||||
find "${D}" -name '*.la' -delete || die
|
||||
}
|
||||
|
|
@ -1,19 +0,0 @@
|
|||
21 Jan 2016; <chymera@gentoo.org> bittorrent-sync-9999.ebuild:
|
||||
net-p2p/bittorrent-sync: updated ebuild
|
||||
|
||||
*bittorrent-sync-9999 (21 Jan 2016)
|
||||
|
||||
21 Jan 2016; <chymera@gentoo.org> +bittorrent-sync-9999.ebuild:
|
||||
net-p2p/bittorrent-sync: trying out live version (currently 2.2.7)
|
||||
|
||||
13 Jan 2016; <chymera@gentoo.org> +files/btsync.conf, +files/init.d/btsync,
|
||||
+files/systemd/btsync.service, -files/btsync.confd, -files/btsync.initd:
|
||||
net-p2p/bittorrent-sync: added service/config files from pigfoot to correct
|
||||
ebuild
|
||||
|
||||
*bittorrent-sync-1.4.110 (13 Jan 2016)
|
||||
|
||||
13 Jan 2016; <chymera@gentoo.org> +bittorrent-sync-1.4.110.ebuild,
|
||||
-bittorrent-sync-1.1.82.ebuild, -bittorrent-sync-1.3.105.ebuild,
|
||||
-bittorrent-sync-1.3.94-r1.ebuild:
|
||||
net-p2p/bittorrent-sync: added new ebuild by pigfoot
|
||||
|
|
@ -1,5 +0,0 @@
|
|||
DIST BitTorrent-Sync_arm.tar.gz 5413181 SHA256 80c018ba8672325deb537f77d48b383722ffa28d6ee10434d81915a79b066404 SHA512 ab6a368325ed7f53fdd66c421651d794f24a9f91614b0091d72933c35e044b4d5bb9adcb2bab86b53bd1177db7beed61416f0e284840c6d132838f1fd0f6e99f WHIRLPOOL acbf57a566e670c10e29f541a3425ab6360f90ba9f2688d20fccf9be7ad27350c76cee8ca80e0c60293a9010eea8ad51e55e230fd5b40386b4088b540b61eb9c
|
||||
DIST BitTorrent-Sync_i386.tar.gz 5199007 SHA256 2cc4079f9492be044bd6dc40052349cfabac38a14d9655d0396f701d478813ba SHA512 3227d0d4c96265e6b903d1692e0b5e1ea4c4de8bd539d9850470327329e614f973f19d00fb8956071660e313a41098b269f8639bb0dc7a22868a8284580083ad WHIRLPOOL 0015e301ea7ec29e321589a98ea7773ad538543d3dd9629c7c9e31d96e25943b4431ed6ae6f9f6ce4ae8e0e999e9289701b880e52dc4eebd298b6b450286bcd7
|
||||
DIST BitTorrent-Sync_x64.tar.gz 5535248 SHA256 eb09aacca9b28125b67a8f48f734d6c5453ed2fe8395a940bbabf5db3c88b0d1 SHA512 ca344bee25f66809d3bd887554525bffed220e887958c1b61cccf344e4171f6df93f4d22af16a0cac7ef4fdf5118bc1201bf57e69ff6fc33a31549cf27c4fe07 WHIRLPOOL e84878b8a2796e04c3370677e89cc43b23e6308217a6422f5c215b3edb939aee70a91513853938ec4d60e78a5440b6a27db558488da9dbaa9d3b82e51e2dd696
|
||||
DIST btsync_i386-1.4.110.tar.gz 3986220 SHA256 5d307dd9a39e2f6688976eb9e2ba8a67dad98ae7f3df59c6550c45d3bae25831 SHA512 c08990d0707376f7eb117170ea72c0de162eb0c7aacf98b752fc915c92b8f7774ee3d5a51e3857ad1ddcc18427b20c7fdb1720de057705c2812c7b030162ae09 WHIRLPOOL 95c9bcc3a8b4b23c1fc86d6512ab32a86ca13c4a561891894a6186cd766a364f449df8bcb7d419c5e1750086e9d6b41180ab76ee3055cd42416c2d0f607d1ecc
|
||||
DIST btsync_x64-1.4.110.tar.gz 4138116 SHA256 edba53cf27a2e64646d5216938fc3a2292e7b1201c864387703ffb7d3b362ead SHA512 c3893f6ee70ebdb0ce61559c17ef6af269ca15cd3ccb79768cfbd0b5cd42bfbc5b41cf4506ddd36ff7bbb62c1307b04b621987c4cbfc7c6ab91b8ca465327129 WHIRLPOOL f40628d97248fd692bfced71f08c687a90ef03018697aa4acbd23a5e1cca7d8cafebb475c0edd62ced89325084e380d241321d0e538008bc411028c2b9f018f0
|
||||
|
|
@ -1,57 +0,0 @@
|
|||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=5
|
||||
|
||||
inherit user systemd
|
||||
|
||||
NAME="btsync"
|
||||
DESCRIPTION="Fast, unlimited and secure file-syncing. Free from the cloud."
|
||||
HOMEPAGE="http://www.getsync.com/"
|
||||
SRC_URI="
|
||||
amd64? ( http://syncapp.bittorrent.com/${PV}/btsync_x64-${PV}.tar.gz )
|
||||
x86? ( http://syncapp.bittorrent.com/${PV}/btsync_i386-${PV}.tar.gz )"
|
||||
|
||||
RESTRICT="mirror strip"
|
||||
LICENSE="BitTorrent"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
|
||||
S="${WORKDIR}"
|
||||
|
||||
pkg_setup() {
|
||||
local btsyncuser="btsync"
|
||||
enewgroup ${btsyncuser}
|
||||
enewuser btsync -1 -1 /var/lib/${NAME} ${btsyncuser}
|
||||
}
|
||||
|
||||
src_install() {
|
||||
# Install the executable
|
||||
exeinto "/opt/${NAME}"
|
||||
doexe "${S}/${NAME}"
|
||||
|
||||
# Install a default configuration file
|
||||
insinto "/etc/${NAME}"
|
||||
newins "${FILESDIR}/btsync.conf" "${NAME}.conf"
|
||||
|
||||
# Install the OpenRC init file
|
||||
doinitd "${FILESDIR}/init.d/${NAME}"
|
||||
|
||||
# Install the systemd unit file
|
||||
systemd_dounit "${FILESDIR}/systemd/${NAME}.service"
|
||||
|
||||
for x in {/var/lib,/run}/${NAME}; do
|
||||
keepdir "${x}"
|
||||
fowners btsync:btsync "${x}"
|
||||
done
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
elog "In order for shared files between local users to be as easy as possible,"
|
||||
elog "please set up ACLs on your system."
|
||||
elog ""
|
||||
elog "You will also need to configure btsync by editing /etc/btsync/config"
|
||||
elog ""
|
||||
elog "After checking your config, start the service and point your browser to"
|
||||
elog "http://localhost:8888 , the default username and password is admin/admin."
|
||||
}
|
||||
|
||||
|
|
@ -1,57 +0,0 @@
|
|||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=5
|
||||
|
||||
inherit user systemd
|
||||
|
||||
NAME="btsync"
|
||||
DESCRIPTION="Fast, unlimited and secure file-syncing. Free from the cloud."
|
||||
HOMEPAGE="http://www.getsync.com/"
|
||||
SRC_URI="amd64? ( https://download-cdn.getsync.com/stable/linux-x64/BitTorrent-Sync_x64.tar.gz )
|
||||
x86? ( https://download-cdn.getsync.com/stable/linux-i386/BitTorrent-Sync_i386.tar.gz )
|
||||
arm? ( https://download-cdn.getsync.com/stable/linux-arm/BitTorrent-Sync_arm.tar.gz )"
|
||||
|
||||
RESTRICT="mirror strip"
|
||||
LICENSE="BitTorrent"
|
||||
SLOT="0"
|
||||
KEYWORDS=""
|
||||
|
||||
S="${WORKDIR}"
|
||||
|
||||
pkg_setup() {
|
||||
local btsyncuser="btsync"
|
||||
enewgroup ${btsyncuser}
|
||||
enewuser btsync -1 -1 /var/lib/${NAME} ${btsyncuser}
|
||||
}
|
||||
|
||||
src_install() {
|
||||
# Install the executable
|
||||
exeinto "/opt/${NAME}"
|
||||
doexe "${S}/${NAME}"
|
||||
|
||||
# Install a default configuration file
|
||||
insinto "/etc/${NAME}"
|
||||
newins "${FILESDIR}/btsync.conf" "${NAME}.conf"
|
||||
|
||||
# Install the OpenRC init file
|
||||
doinitd "${FILESDIR}/init.d/${NAME}"
|
||||
|
||||
# Install the systemd unit file
|
||||
systemd_dounit "${FILESDIR}/systemd/${NAME}.service"
|
||||
|
||||
for x in {/var/lib,/run}/${NAME}; do
|
||||
keepdir "${x}"
|
||||
fowners btsync:btsync "${x}"
|
||||
done
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
elog "In order for shared files between local users to be as easy as possible,"
|
||||
elog "please set up ACLs on your system."
|
||||
elog ""
|
||||
elog "You will also need to configure btsync by editing /etc/btsync/config"
|
||||
elog ""
|
||||
elog "After checking your config, start the service and point your browser to"
|
||||
elog "http://localhost:8888 , the default username and password is admin/admin."
|
||||
}
|
||||
|
||||
|
|
@ -1,20 +0,0 @@
|
|||
{
|
||||
"device_name": "Gentoo",
|
||||
"listening_port" : 0,
|
||||
|
||||
"storage_path" : "/var/lib/btsync",
|
||||
"pid_file" : "/var/run/btsync/btsync.pid",
|
||||
|
||||
"check_for_updates" : true,
|
||||
"use_upnp" : true,
|
||||
|
||||
"download_limit" : 0,
|
||||
"upload_limit" : 0,
|
||||
|
||||
"webui" :
|
||||
{
|
||||
"listen" : "127.0.0.1:8888",
|
||||
"login" : "admin",
|
||||
"password" : "admin"
|
||||
}
|
||||
}
|
||||
|
|
@ -1,44 +0,0 @@
|
|||
#!/sbin/runscript
|
||||
|
||||
# Copyright 2013-2014 Jonathan Vasquez <jvasquez1011@gmail.com>
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
NAME="BitTorrent Sync"
|
||||
SYNC_NAME="btsync"
|
||||
SYNC_PATH="/opt/${SYNC_NAME}/"
|
||||
SYNC_BINARY="${SYNC_PATH}/${SYNC_NAME}"
|
||||
SYNC_OPTS="--nodaemon --config /etc/${SYNC_NAME}/btsync.conf"
|
||||
SYNC_PIDFILE="/var/run/${SYNC_NAME}/${SYNC_NAME}.pid"
|
||||
SYNC_USER=${SYNC_USER:-btsync}
|
||||
SYNC_GROUP=${SYNC_GROUP:-btsync}
|
||||
|
||||
start() {
|
||||
ebegin "Starting ${NAME}"
|
||||
|
||||
# Sets the umask for the process so that btsync creates files
|
||||
# with group write permissions
|
||||
start-stop-daemon --start --exec "${SYNC_BINARY}" \
|
||||
--pidfile "${SYNC_PIDFILE}" --background \
|
||||
--user "${SYNC_USER}" --group "${SYNC_GROUP}" \
|
||||
-- ${SYNC_OPTS}
|
||||
|
||||
eend $?
|
||||
}
|
||||
|
||||
stop() {
|
||||
ebegin "Stopping ${NAME}"
|
||||
|
||||
start-stop-daemon --stop --exec "${SYNC_BINARY}" \
|
||||
--pidfile "${SYNC_PIDFILE}"
|
||||
|
||||
eend $?
|
||||
}
|
||||
|
||||
reload() {
|
||||
ebegin "Reloading ${NAME}"
|
||||
|
||||
start-stop-daemon --signal HUP --exec "${SYNC_BINARY}" \
|
||||
--pidfile "${SYNC_PIDFILE}"
|
||||
|
||||
eend $?
|
||||
}
|
||||
|
|
@ -1,14 +0,0 @@
|
|||
# Copyright 2014-2016 Jonathan Vasquez <jvasquez1011@gmail.com>
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
[Unit]
|
||||
Description=BitTorrent Sync
|
||||
After=systemd-udev-settle.target local-fs.target zfs.service
|
||||
|
||||
[Service]
|
||||
Type=forking
|
||||
ExecStart=/opt/btsync/btsync --config /etc/btsync/config
|
||||
|
||||
[Install]
|
||||
WantedBy=multi-user.target
|
||||
|
||||
|
|
@ -1,7 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<longdescription lang="en">
|
||||
BitTorrent Sync app for Linux.
|
||||
</longdescription>
|
||||
</pkgmetadata>
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
30 Oct 2016; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
|
||||
sci-libs/nipype: downloading from separate branch
|
||||
|
||||
*nipype-9999 (30 Oct 2016)
|
||||
|
||||
30 Oct 2016; Horea Christian <h.chr@mail.ru> +metadata.xml,
|
||||
+nipype-9999.ebuild:
|
||||
sci-libs/nipype: my temporal nipype fork
|
||||
|
|
@ -1,32 +0,0 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="person">
|
||||
<email>horea.christ@gmail.com</email>
|
||||
<name>Horea Christian</name>
|
||||
</maintainer>
|
||||
<maintainer type="project">
|
||||
<email>sci@gentoo.org</email>
|
||||
<name>Gentoo Science Project</name>
|
||||
</maintainer>
|
||||
<longdescription lang="en">
|
||||
Nipype, an open-source, community-developed initiative under the
|
||||
umbrella of NiPy, is a Python project that provides a uniform interface
|
||||
to existing neuroimaging software and facilitates interaction between
|
||||
these packages within a single workflow. Nipype provides an environment
|
||||
that encourages interactive exploration of algorithms from different
|
||||
packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
|
||||
eases the design of workflows within and between packages, and reduces
|
||||
the learning curve necessary to use different packages. Nipype is
|
||||
creating a collaborative platform for neuroimaging software development
|
||||
in a high-level language and addressing limitations of existing pipeline systems.
|
||||
</longdescription>
|
||||
<upstream>
|
||||
<remote-id type="sourceforge">nipy</remote-id>
|
||||
</upstream>
|
||||
<use>
|
||||
<flag name="spm">Pull in "Statistical Parametric Mapping" (sci-biology/spm)</flag>
|
||||
<flag name="fsl">Pull in the "FMRIB Software Library" (sci-biology/fsl)</flag>
|
||||
<flag name="afni">Pull in the NIH AFNI software bundle (sci-biology/afni)</flag>
|
||||
</use>
|
||||
</pkgmetadata>
|
||||
|
|
@ -1,53 +0,0 @@
|
|||
# Copyright 1999-2016 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Id$
|
||||
|
||||
EAPI=6
|
||||
|
||||
PYTHON_COMPAT=( python{2_7,3_4,3_5} )
|
||||
PYTHON_REQ_USE="threads(+),sqlite"
|
||||
|
||||
inherit distutils-r1 git-r3
|
||||
|
||||
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
|
||||
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
|
||||
SRC_URI=""
|
||||
EGIT_REPO_URI="https://github.com/TheChymera/nipype"
|
||||
EGIT_BRANCH="hack"
|
||||
|
||||
LICENSE="BSD"
|
||||
SLOT="0"
|
||||
KEYWORDS=""
|
||||
IUSE="test"
|
||||
|
||||
DEPEND="
|
||||
dev-python/future[${PYTHON_USEDEP}]
|
||||
dev-python/prov[${PYTHON_USEDEP}]
|
||||
dev-python/numpy[${PYTHON_USEDEP}]
|
||||
dev-python/setuptools[${PYTHON_USEDEP}]
|
||||
sci-libs/nibabel[${PYTHON_USEDEP}]
|
||||
test? ( dev-python/mock[${PYTHON_USEDEP}] )
|
||||
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
|
||||
"
|
||||
RDEPEND="
|
||||
dev-python/networkx[${PYTHON_USEDEP}]
|
||||
dev-python/pydotplus[${PYTHON_USEDEP}]
|
||||
dev-python/pygraphviz[${PYTHON_USEDEP}]
|
||||
dev-python/traits[${PYTHON_USEDEP}]
|
||||
sci-libs/scipy[${PYTHON_USEDEP}]
|
||||
dev-python/simplejson[${PYTHON_USEDEP}]
|
||||
"
|
||||
|
||||
python_prepare_all() {
|
||||
distutils-r1_python_prepare_all
|
||||
EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
|
||||
CORRECTED_REQUIRE="setup_requires=\['future'\]"
|
||||
sed \
|
||||
-e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
|
||||
-i setup.py \
|
||||
|| die "sed setup.py"
|
||||
}
|
||||
|
||||
python_test() {
|
||||
nosetests -v || die
|
||||
}
|
||||
Loading…
Reference in New Issue