From 59234db756375e7764adb3f870f3c9ac0ca20390 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Sat, 3 Dec 2016 15:51:15 +0100 Subject: [PATCH 1/4] tracking graph-tool until bump is pushed to main tree --- dev-python/graph-tool/Manifest | 1 + dev-python/graph-tool/graph-tool-2.19.ebuild | 90 ++++++++++++++++++++ 2 files changed, 91 insertions(+) create mode 100644 dev-python/graph-tool/Manifest create mode 100644 dev-python/graph-tool/graph-tool-2.19.ebuild diff --git a/dev-python/graph-tool/Manifest b/dev-python/graph-tool/Manifest new file mode 100644 index 0000000..66f381e --- /dev/null +++ b/dev-python/graph-tool/Manifest @@ -0,0 +1 @@ +DIST graph-tool-2.19.tar.bz2 15147961 SHA256 eba1090f94b0434890beedaf0c100dd0fc77e41ebfe29b4725d76cadb82099af SHA512 dc0bd93ccf21bb6616035dbfe33b0d9406eb894791e615795d486dc8f9d9991a6b93cf835cf4e59197005c14faedf105f3384cccd42db544104840cf857b2a84 WHIRLPOOL 3a398c98487a1e29952fea4c3ff8671e5aaf3d4f9e8df26aae9f6a856e61c290954f4c662e48ae424cbe0b916833a8f3bc7a6eefe6c6c3a08540de58ed6b9de0 diff --git a/dev-python/graph-tool/graph-tool-2.19.ebuild b/dev-python/graph-tool/graph-tool-2.19.ebuild new file mode 100644 index 0000000..cee02ef --- /dev/null +++ b/dev-python/graph-tool/graph-tool-2.19.ebuild @@ -0,0 +1,90 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{4,5} ) + +inherit check-reqs toolchain-funcs python-r1 + +if [[ ${PV} == "9999" ]] ; then + EGIT_REPO_URI="https://github.com/count0/graph-tool.git" + inherit autotools git-r3 +else + SRC_URI="http://downloads.skewed.de/${PN}/${P}.tar.bz2" + KEYWORDS="~amd64 ~x86" +fi + +DESCRIPTION="An efficient python module for manipulation and statistical analysis of graphs" +HOMEPAGE="http://graph-tool.skewed.de/" + +LICENSE="GPL-3" +SLOT="0" +IUSE="+cairo openmp" + +# Bug #536734; configure sets boostlib 1.53.0 but 1.54.0 is required +RDEPEND="${PYTHON_DEPS} + >=dev-libs/boost-1.54.0[python,${PYTHON_USEDEP}] + dev-libs/expat + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + >=sci-mathematics/cgal-3.5 + cairo? ( + dev-cpp/cairomm + dev-python/pycairo[${PYTHON_USEDEP}] + ) + dev-python/matplotlib[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND} + dev-cpp/sparsehash + virtual/pkgconfig" + +# most machines don't have enough ram for parallel builds +MAKEOPTS="${MAKEOPTS} -j1" + +# bug 453544 +CHECKREQS_DISK_BUILD="6G" + +pkg_pretend() { + if use openmp ; then + tc-has-openmp || die "Please switch to an openmp compatible compiler" + fi + check-reqs_pkg_pretend +} + +src_prepare() { + default + [[ ${PV} == "9999" ]] && eautoreconf + >py-compile + python_copy_sources +} + +src_configure() { + local threads + has_version dev-libs/boost[threads] && threads="-mt" + + configure() { + econf \ + --disable-static \ + --disable-optimization \ + $(use_enable openmp) \ + $(use_enable cairo) \ + --with-boost-python="${EPYTHON: -3}${threads}" + } + python_foreach_impl run_in_build_dir configure +} + +src_compile() { + python_foreach_impl run_in_build_dir default +} + +src_install() { + python_foreach_impl run_in_build_dir default + prune_libtool_files --modules +} + +run_in_build_dir() { + pushd "${BUILD_DIR}" > /dev/null + "$@" + popd > /dev/null +} From 5621cec508abbf05e49413b1d84a9b628f19a894 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Sun, 11 Dec 2016 22:38:22 +0100 Subject: [PATCH 2/4] cleaned up deprecated ebuilds --- app-misc/godep/godep-9999.ebuild | 44 -------------- dev-python/graph-tool/graph-tool-2.19.ebuild | 24 ++++---- net-p2p/bittorrent-sync/ChangeLog | 19 ------- net-p2p/bittorrent-sync/Manifest | 5 -- .../bittorrent-sync-1.4.110.ebuild | 57 ------------------- .../bittorrent-sync-9999.ebuild | 57 ------------------- net-p2p/bittorrent-sync/files/btsync.conf | 20 ------- net-p2p/bittorrent-sync/files/init.d/btsync | 44 -------------- .../files/systemd/btsync.service | 14 ----- net-p2p/bittorrent-sync/metadata.xml | 7 --- 10 files changed, 11 insertions(+), 280 deletions(-) delete mode 100644 app-misc/godep/godep-9999.ebuild delete mode 100644 net-p2p/bittorrent-sync/ChangeLog delete mode 100644 net-p2p/bittorrent-sync/Manifest delete mode 100644 net-p2p/bittorrent-sync/bittorrent-sync-1.4.110.ebuild delete mode 100644 net-p2p/bittorrent-sync/bittorrent-sync-9999.ebuild delete mode 100644 net-p2p/bittorrent-sync/files/btsync.conf delete mode 100644 net-p2p/bittorrent-sync/files/init.d/btsync delete mode 100644 net-p2p/bittorrent-sync/files/systemd/btsync.service delete mode 100644 net-p2p/bittorrent-sync/metadata.xml diff --git a/app-misc/godep/godep-9999.ebuild b/app-misc/godep/godep-9999.ebuild deleted file mode 100644 index 38ba91d..0000000 --- a/app-misc/godep/godep-9999.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: $ - -EAPI="5" - -inherit git-r3 - -RESTRICT="strip" - -DESCRIPTION="native bindings for the FUSE kernel module" -HOMEPAGE="https://github.com/tools/godep" -EGIT_REPO_URI="https://github.com/tools/${PN}.git" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="dev-lang/go" -RDEPEND="" - -GO_PN="github.com/tools/${PN}" -EGIT_CHECKOUT_DIR="${S}/src/${GO_PN}" - -export GOPATH="${S}" - -src_prepare() { - go get ${GO_PN} -} - -src_compile() { - go build -v -x -work ${GO_PN} || die -} - -src_install() { -# go install -v -x -work ${GO_PN} || die - -dobin ${S}/bin/godep -#insinto /usr/lib/go/ -#doins -r "${S}/pkg" -#insinto /usr/lib/go/src/pkg -#doins -r "${S}/src/." -} diff --git a/dev-python/graph-tool/graph-tool-2.19.ebuild b/dev-python/graph-tool/graph-tool-2.19.ebuild index cee02ef..d2515c4 100644 --- a/dev-python/graph-tool/graph-tool-2.19.ebuild +++ b/dev-python/graph-tool/graph-tool-2.19.ebuild @@ -23,13 +23,12 @@ LICENSE="GPL-3" SLOT="0" IUSE="+cairo openmp" -# Bug #536734; configure sets boostlib 1.53.0 but 1.54.0 is required RDEPEND="${PYTHON_DEPS} - >=dev-libs/boost-1.54.0[python,${PYTHON_USEDEP}] + dev-libs/boost:=[python,${PYTHON_USEDEP}] dev-libs/expat dev-python/numpy[${PYTHON_USEDEP}] sci-libs/scipy[${PYTHON_USEDEP}] - >=sci-mathematics/cgal-3.5 + sci-mathematics/cgal cairo? ( dev-cpp/cairomm dev-python/pycairo[${PYTHON_USEDEP}] @@ -46,16 +45,19 @@ MAKEOPTS="${MAKEOPTS} -j1" CHECKREQS_DISK_BUILD="6G" pkg_pretend() { - if use openmp ; then - tc-has-openmp || die "Please switch to an openmp compatible compiler" - fi + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp \ + || die "Please switch to an openmp compatible compiler" check-reqs_pkg_pretend } +pkg_setup() { + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp \ + || die "Please switch to an openmp compatible compiler" +} + src_prepare() { default [[ ${PV} == "9999" ]] && eautoreconf - >py-compile python_copy_sources } @@ -80,11 +82,7 @@ src_compile() { src_install() { python_foreach_impl run_in_build_dir default - prune_libtool_files --modules + find "${D}" -name '*.la' -delete || die + einstalldocs } -run_in_build_dir() { - pushd "${BUILD_DIR}" > /dev/null - "$@" - popd > /dev/null -} diff --git a/net-p2p/bittorrent-sync/ChangeLog b/net-p2p/bittorrent-sync/ChangeLog deleted file mode 100644 index 5db3d82..0000000 --- a/net-p2p/bittorrent-sync/ChangeLog +++ /dev/null @@ -1,19 +0,0 @@ - 21 Jan 2016; bittorrent-sync-9999.ebuild: - net-p2p/bittorrent-sync: updated ebuild - -*bittorrent-sync-9999 (21 Jan 2016) - - 21 Jan 2016; +bittorrent-sync-9999.ebuild: - net-p2p/bittorrent-sync: trying out live version (currently 2.2.7) - - 13 Jan 2016; +files/btsync.conf, +files/init.d/btsync, - +files/systemd/btsync.service, -files/btsync.confd, -files/btsync.initd: - net-p2p/bittorrent-sync: added service/config files from pigfoot to correct - ebuild - -*bittorrent-sync-1.4.110 (13 Jan 2016) - - 13 Jan 2016; +bittorrent-sync-1.4.110.ebuild, - -bittorrent-sync-1.1.82.ebuild, -bittorrent-sync-1.3.105.ebuild, - -bittorrent-sync-1.3.94-r1.ebuild: - net-p2p/bittorrent-sync: added new ebuild by pigfoot diff --git a/net-p2p/bittorrent-sync/Manifest b/net-p2p/bittorrent-sync/Manifest deleted file mode 100644 index 0e6b1dd..0000000 --- a/net-p2p/bittorrent-sync/Manifest +++ /dev/null @@ -1,5 +0,0 @@ -DIST BitTorrent-Sync_arm.tar.gz 5413181 SHA256 80c018ba8672325deb537f77d48b383722ffa28d6ee10434d81915a79b066404 SHA512 ab6a368325ed7f53fdd66c421651d794f24a9f91614b0091d72933c35e044b4d5bb9adcb2bab86b53bd1177db7beed61416f0e284840c6d132838f1fd0f6e99f WHIRLPOOL acbf57a566e670c10e29f541a3425ab6360f90ba9f2688d20fccf9be7ad27350c76cee8ca80e0c60293a9010eea8ad51e55e230fd5b40386b4088b540b61eb9c -DIST BitTorrent-Sync_i386.tar.gz 5199007 SHA256 2cc4079f9492be044bd6dc40052349cfabac38a14d9655d0396f701d478813ba SHA512 3227d0d4c96265e6b903d1692e0b5e1ea4c4de8bd539d9850470327329e614f973f19d00fb8956071660e313a41098b269f8639bb0dc7a22868a8284580083ad WHIRLPOOL 0015e301ea7ec29e321589a98ea7773ad538543d3dd9629c7c9e31d96e25943b4431ed6ae6f9f6ce4ae8e0e999e9289701b880e52dc4eebd298b6b450286bcd7 -DIST BitTorrent-Sync_x64.tar.gz 5535248 SHA256 eb09aacca9b28125b67a8f48f734d6c5453ed2fe8395a940bbabf5db3c88b0d1 SHA512 ca344bee25f66809d3bd887554525bffed220e887958c1b61cccf344e4171f6df93f4d22af16a0cac7ef4fdf5118bc1201bf57e69ff6fc33a31549cf27c4fe07 WHIRLPOOL e84878b8a2796e04c3370677e89cc43b23e6308217a6422f5c215b3edb939aee70a91513853938ec4d60e78a5440b6a27db558488da9dbaa9d3b82e51e2dd696 -DIST btsync_i386-1.4.110.tar.gz 3986220 SHA256 5d307dd9a39e2f6688976eb9e2ba8a67dad98ae7f3df59c6550c45d3bae25831 SHA512 c08990d0707376f7eb117170ea72c0de162eb0c7aacf98b752fc915c92b8f7774ee3d5a51e3857ad1ddcc18427b20c7fdb1720de057705c2812c7b030162ae09 WHIRLPOOL 95c9bcc3a8b4b23c1fc86d6512ab32a86ca13c4a561891894a6186cd766a364f449df8bcb7d419c5e1750086e9d6b41180ab76ee3055cd42416c2d0f607d1ecc -DIST btsync_x64-1.4.110.tar.gz 4138116 SHA256 edba53cf27a2e64646d5216938fc3a2292e7b1201c864387703ffb7d3b362ead SHA512 c3893f6ee70ebdb0ce61559c17ef6af269ca15cd3ccb79768cfbd0b5cd42bfbc5b41cf4506ddd36ff7bbb62c1307b04b621987c4cbfc7c6ab91b8ca465327129 WHIRLPOOL f40628d97248fd692bfced71f08c687a90ef03018697aa4acbd23a5e1cca7d8cafebb475c0edd62ced89325084e380d241321d0e538008bc411028c2b9f018f0 diff --git a/net-p2p/bittorrent-sync/bittorrent-sync-1.4.110.ebuild b/net-p2p/bittorrent-sync/bittorrent-sync-1.4.110.ebuild deleted file mode 100644 index 3c0a7b6..0000000 --- a/net-p2p/bittorrent-sync/bittorrent-sync-1.4.110.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit user systemd - -NAME="btsync" -DESCRIPTION="Fast, unlimited and secure file-syncing. Free from the cloud." -HOMEPAGE="http://www.getsync.com/" -SRC_URI=" - amd64? ( http://syncapp.bittorrent.com/${PV}/btsync_x64-${PV}.tar.gz ) - x86? ( http://syncapp.bittorrent.com/${PV}/btsync_i386-${PV}.tar.gz )" - -RESTRICT="mirror strip" -LICENSE="BitTorrent" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -S="${WORKDIR}" - -pkg_setup() { - local btsyncuser="btsync" - enewgroup ${btsyncuser} - enewuser btsync -1 -1 /var/lib/${NAME} ${btsyncuser} -} - -src_install() { - # Install the executable - exeinto "/opt/${NAME}" - doexe "${S}/${NAME}" - - # Install a default configuration file - insinto "/etc/${NAME}" - newins "${FILESDIR}/btsync.conf" "${NAME}.conf" - - # Install the OpenRC init file - doinitd "${FILESDIR}/init.d/${NAME}" - - # Install the systemd unit file - systemd_dounit "${FILESDIR}/systemd/${NAME}.service" - - for x in {/var/lib,/run}/${NAME}; do - keepdir "${x}" - fowners btsync:btsync "${x}" - done -} - -pkg_postinst() { - elog "In order for shared files between local users to be as easy as possible," - elog "please set up ACLs on your system." - elog "" - elog "You will also need to configure btsync by editing /etc/btsync/config" - elog "" - elog "After checking your config, start the service and point your browser to" - elog "http://localhost:8888 , the default username and password is admin/admin." -} - diff --git a/net-p2p/bittorrent-sync/bittorrent-sync-9999.ebuild b/net-p2p/bittorrent-sync/bittorrent-sync-9999.ebuild deleted file mode 100644 index fffe8e2..0000000 --- a/net-p2p/bittorrent-sync/bittorrent-sync-9999.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit user systemd - -NAME="btsync" -DESCRIPTION="Fast, unlimited and secure file-syncing. Free from the cloud." -HOMEPAGE="http://www.getsync.com/" -SRC_URI="amd64? ( https://download-cdn.getsync.com/stable/linux-x64/BitTorrent-Sync_x64.tar.gz ) - x86? ( https://download-cdn.getsync.com/stable/linux-i386/BitTorrent-Sync_i386.tar.gz ) - arm? ( https://download-cdn.getsync.com/stable/linux-arm/BitTorrent-Sync_arm.tar.gz )" - -RESTRICT="mirror strip" -LICENSE="BitTorrent" -SLOT="0" -KEYWORDS="" - -S="${WORKDIR}" - -pkg_setup() { - local btsyncuser="btsync" - enewgroup ${btsyncuser} - enewuser btsync -1 -1 /var/lib/${NAME} ${btsyncuser} -} - -src_install() { - # Install the executable - exeinto "/opt/${NAME}" - doexe "${S}/${NAME}" - - # Install a default configuration file - insinto "/etc/${NAME}" - newins "${FILESDIR}/btsync.conf" "${NAME}.conf" - - # Install the OpenRC init file - doinitd "${FILESDIR}/init.d/${NAME}" - - # Install the systemd unit file - systemd_dounit "${FILESDIR}/systemd/${NAME}.service" - - for x in {/var/lib,/run}/${NAME}; do - keepdir "${x}" - fowners btsync:btsync "${x}" - done -} - -pkg_postinst() { - elog "In order for shared files between local users to be as easy as possible," - elog "please set up ACLs on your system." - elog "" - elog "You will also need to configure btsync by editing /etc/btsync/config" - elog "" - elog "After checking your config, start the service and point your browser to" - elog "http://localhost:8888 , the default username and password is admin/admin." -} - diff --git a/net-p2p/bittorrent-sync/files/btsync.conf b/net-p2p/bittorrent-sync/files/btsync.conf deleted file mode 100644 index 6a4a5a9..0000000 --- a/net-p2p/bittorrent-sync/files/btsync.conf +++ /dev/null @@ -1,20 +0,0 @@ -{ - "device_name": "Gentoo", - "listening_port" : 0, - - "storage_path" : "/var/lib/btsync", - "pid_file" : "/var/run/btsync/btsync.pid", - - "check_for_updates" : true, - "use_upnp" : true, - - "download_limit" : 0, - "upload_limit" : 0, - - "webui" : - { - "listen" : "127.0.0.1:8888", - "login" : "admin", - "password" : "admin" - } -} diff --git a/net-p2p/bittorrent-sync/files/init.d/btsync b/net-p2p/bittorrent-sync/files/init.d/btsync deleted file mode 100644 index 9e7cd3d..0000000 --- a/net-p2p/bittorrent-sync/files/init.d/btsync +++ /dev/null @@ -1,44 +0,0 @@ -#!/sbin/runscript - -# Copyright 2013-2014 Jonathan Vasquez -# Distributed under the terms of the GNU General Public License v2 - -NAME="BitTorrent Sync" -SYNC_NAME="btsync" -SYNC_PATH="/opt/${SYNC_NAME}/" -SYNC_BINARY="${SYNC_PATH}/${SYNC_NAME}" -SYNC_OPTS="--nodaemon --config /etc/${SYNC_NAME}/btsync.conf" -SYNC_PIDFILE="/var/run/${SYNC_NAME}/${SYNC_NAME}.pid" -SYNC_USER=${SYNC_USER:-btsync} -SYNC_GROUP=${SYNC_GROUP:-btsync} - -start() { - ebegin "Starting ${NAME}" - - # Sets the umask for the process so that btsync creates files - # with group write permissions - start-stop-daemon --start --exec "${SYNC_BINARY}" \ - --pidfile "${SYNC_PIDFILE}" --background \ - --user "${SYNC_USER}" --group "${SYNC_GROUP}" \ - -- ${SYNC_OPTS} - - eend $? -} - -stop() { - ebegin "Stopping ${NAME}" - - start-stop-daemon --stop --exec "${SYNC_BINARY}" \ - --pidfile "${SYNC_PIDFILE}" - - eend $? -} - -reload() { - ebegin "Reloading ${NAME}" - - start-stop-daemon --signal HUP --exec "${SYNC_BINARY}" \ - --pidfile "${SYNC_PIDFILE}" - - eend $? -} diff --git a/net-p2p/bittorrent-sync/files/systemd/btsync.service b/net-p2p/bittorrent-sync/files/systemd/btsync.service deleted file mode 100644 index 09554e6..0000000 --- a/net-p2p/bittorrent-sync/files/systemd/btsync.service +++ /dev/null @@ -1,14 +0,0 @@ -# Copyright 2014-2016 Jonathan Vasquez -# Distributed under the terms of the GNU General Public License v2 - -[Unit] -Description=BitTorrent Sync -After=systemd-udev-settle.target local-fs.target zfs.service - -[Service] -Type=forking -ExecStart=/opt/btsync/btsync --config /etc/btsync/config - -[Install] -WantedBy=multi-user.target - diff --git a/net-p2p/bittorrent-sync/metadata.xml b/net-p2p/bittorrent-sync/metadata.xml deleted file mode 100644 index 46ca2f0..0000000 --- a/net-p2p/bittorrent-sync/metadata.xml +++ /dev/null @@ -1,7 +0,0 @@ - - - - - BitTorrent Sync app for Linux. - - From e78953f7f13ab2b2847b6f279b63d81158e74db9 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Sat, 31 Dec 2016 04:31:23 +0100 Subject: [PATCH 3/4] added python 3 compatibility --- app-misc/repositorg/repositorg-9999.ebuild | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/app-misc/repositorg/repositorg-9999.ebuild b/app-misc/repositorg/repositorg-9999.ebuild index dd8f42f..6252f70 100644 --- a/app-misc/repositorg/repositorg-9999.ebuild +++ b/app-misc/repositorg/repositorg-9999.ebuild @@ -4,7 +4,7 @@ EAPI=6 -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) inherit distutils-r1 git-r3 multilib From c27debbd2c1c1d4c052a6b0ba96737d3499b8541 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Mon, 9 Jan 2017 13:46:30 +0100 Subject: [PATCH 4/4] deleted nipype --- dev-python/graph-tool/graph-tool-2.19.ebuild | 9 +--- sci-libs/nipype/ChangeLog | 8 --- sci-libs/nipype/metadata.xml | 32 ------------ sci-libs/nipype/nipype-9999.ebuild | 53 -------------------- 4 files changed, 2 insertions(+), 100 deletions(-) delete mode 100644 sci-libs/nipype/ChangeLog delete mode 100644 sci-libs/nipype/metadata.xml delete mode 100644 sci-libs/nipype/nipype-9999.ebuild diff --git a/dev-python/graph-tool/graph-tool-2.19.ebuild b/dev-python/graph-tool/graph-tool-2.19.ebuild index d2515c4..45b35b9 100644 --- a/dev-python/graph-tool/graph-tool-2.19.ebuild +++ b/dev-python/graph-tool/graph-tool-2.19.ebuild @@ -38,9 +38,6 @@ DEPEND="${RDEPEND} dev-cpp/sparsehash virtual/pkgconfig" -# most machines don't have enough ram for parallel builds -MAKEOPTS="${MAKEOPTS} -j1" - # bug 453544 CHECKREQS_DISK_BUILD="6G" @@ -63,7 +60,7 @@ src_prepare() { src_configure() { local threads - has_version dev-libs/boost[threads] && threads="-mt" + has_version "dev-libs/boost[threads]" && threads="-mt" configure() { econf \ @@ -77,12 +74,10 @@ src_configure() { } src_compile() { - python_foreach_impl run_in_build_dir default + python_foreach_impl run_in_build_dir emake -j1 || die "emake failed" } src_install() { python_foreach_impl run_in_build_dir default find "${D}" -name '*.la' -delete || die - einstalldocs } - diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog deleted file mode 100644 index 42410d3..0000000 --- a/sci-libs/nipype/ChangeLog +++ /dev/null @@ -1,8 +0,0 @@ - 30 Oct 2016; Horea Christian nipype-9999.ebuild: - sci-libs/nipype: downloading from separate branch - -*nipype-9999 (30 Oct 2016) - - 30 Oct 2016; Horea Christian +metadata.xml, - +nipype-9999.ebuild: - sci-libs/nipype: my temporal nipype fork diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml deleted file mode 100644 index 3873d5d..0000000 --- a/sci-libs/nipype/metadata.xml +++ /dev/null @@ -1,32 +0,0 @@ - - - - - horea.christ@gmail.com - Horea Christian - - - sci@gentoo.org - Gentoo Science Project - - - Nipype, an open-source, community-developed initiative under the - umbrella of NiPy, is a Python project that provides a uniform interface - to existing neuroimaging software and facilitates interaction between - these packages within a single workflow. Nipype provides an environment - that encourages interactive exploration of algorithms from different - packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer), - eases the design of workflows within and between packages, and reduces - the learning curve necessary to use different packages. Nipype is - creating a collaborative platform for neuroimaging software development - in a high-level language and addressing limitations of existing pipeline systems. - - - nipy - - - Pull in "Statistical Parametric Mapping" (sci-biology/spm) - Pull in the "FMRIB Software Library" (sci-biology/fsl) - Pull in the NIH AFNI software bundle (sci-biology/afni) - - diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild deleted file mode 100644 index 668ed34..0000000 --- a/sci-libs/nipype/nipype-9999.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 - -PYTHON_COMPAT=( python{2_7,3_4,3_5} ) -PYTHON_REQ_USE="threads(+),sqlite" - -inherit distutils-r1 git-r3 - -DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" -HOMEPAGE="http://nipy.sourceforge.net/nipype/" -SRC_URI="" -EGIT_REPO_URI="https://github.com/TheChymera/nipype" -EGIT_BRANCH="hack" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="" -IUSE="test" - -DEPEND=" - dev-python/future[${PYTHON_USEDEP}] - dev-python/prov[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - sci-libs/nibabel[${PYTHON_USEDEP}] - test? ( dev-python/mock[${PYTHON_USEDEP}] ) - $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) - " -RDEPEND=" - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/pydotplus[${PYTHON_USEDEP}] - dev-python/pygraphviz[${PYTHON_USEDEP}] - dev-python/traits[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - dev-python/simplejson[${PYTHON_USEDEP}] - " - -python_prepare_all() { - distutils-r1_python_prepare_all - EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]" - CORRECTED_REQUIRE="setup_requires=\['future'\]" - sed \ - -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ - -i setup.py \ - || die "sed setup.py" -} - -python_test() { - nosetests -v || die -}