deleted nipype
This commit is contained in:
Horea Christian
parent
e78953f7f1
commit
c27debbd2c
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@ -38,9 +38,6 @@ DEPEND="${RDEPEND}
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dev-cpp/sparsehash
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virtual/pkgconfig"
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# most machines don't have enough ram for parallel builds
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MAKEOPTS="${MAKEOPTS} -j1"
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# bug 453544
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CHECKREQS_DISK_BUILD="6G"
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@ -63,7 +60,7 @@ src_prepare() {
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src_configure() {
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local threads
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has_version dev-libs/boost[threads] && threads="-mt"
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has_version "dev-libs/boost[threads]" && threads="-mt"
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configure() {
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econf \
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@ -77,12 +74,10 @@ src_configure() {
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}
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src_compile() {
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python_foreach_impl run_in_build_dir default
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python_foreach_impl run_in_build_dir emake -j1 || die "emake failed"
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}
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src_install() {
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python_foreach_impl run_in_build_dir default
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find "${D}" -name '*.la' -delete || die
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einstalldocs
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}
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@ -1,8 +0,0 @@
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30 Oct 2016; Horea Christian <h.chr@mail.ru> nipype-9999.ebuild:
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sci-libs/nipype: downloading from separate branch
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*nipype-9999 (30 Oct 2016)
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30 Oct 2016; Horea Christian <h.chr@mail.ru> +metadata.xml,
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+nipype-9999.ebuild:
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sci-libs/nipype: my temporal nipype fork
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@ -1,32 +0,0 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>horea.christ@gmail.com</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<longdescription lang="en">
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Nipype, an open-source, community-developed initiative under the
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umbrella of NiPy, is a Python project that provides a uniform interface
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to existing neuroimaging software and facilitates interaction between
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these packages within a single workflow. Nipype provides an environment
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that encourages interactive exploration of algorithms from different
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packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
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eases the design of workflows within and between packages, and reduces
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the learning curve necessary to use different packages. Nipype is
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creating a collaborative platform for neuroimaging software development
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in a high-level language and addressing limitations of existing pipeline systems.
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</longdescription>
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<upstream>
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<remote-id type="sourceforge">nipy</remote-id>
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</upstream>
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<use>
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<flag name="spm">Pull in "Statistical Parametric Mapping" (sci-biology/spm)</flag>
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<flag name="fsl">Pull in the "FMRIB Software Library" (sci-biology/fsl)</flag>
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<flag name="afni">Pull in the NIH AFNI software bundle (sci-biology/afni)</flag>
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</use>
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</pkgmetadata>
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@ -1,53 +0,0 @@
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# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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PYTHON_COMPAT=( python{2_7,3_4,3_5} )
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PYTHON_REQ_USE="threads(+),sqlite"
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inherit distutils-r1 git-r3
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DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
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HOMEPAGE="http://nipy.sourceforge.net/nipype/"
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SRC_URI=""
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EGIT_REPO_URI="https://github.com/TheChymera/nipype"
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EGIT_BRANCH="hack"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS=""
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IUSE="test"
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DEPEND="
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dev-python/future[${PYTHON_USEDEP}]
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dev-python/prov[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/setuptools[${PYTHON_USEDEP}]
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sci-libs/nibabel[${PYTHON_USEDEP}]
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test? ( dev-python/mock[${PYTHON_USEDEP}] )
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$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
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"
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RDEPEND="
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dev-python/networkx[${PYTHON_USEDEP}]
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dev-python/pydotplus[${PYTHON_USEDEP}]
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dev-python/pygraphviz[${PYTHON_USEDEP}]
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dev-python/traits[${PYTHON_USEDEP}]
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sci-libs/scipy[${PYTHON_USEDEP}]
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dev-python/simplejson[${PYTHON_USEDEP}]
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"
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python_prepare_all() {
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distutils-r1_python_prepare_all
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EXISTING_REQUIRE="setup_requires=\['future', 'configparser'\]"
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CORRECTED_REQUIRE="setup_requires=\['future'\]"
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sed \
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-e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
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-i setup.py \
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|| die "sed setup.py"
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}
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python_test() {
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nosetests -v || die
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}
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