move csv parsing to document_formats

This commit is contained in:
mpostma 2021-09-28 22:58:48 +02:00
parent 2a14948123
commit 6e8a3fe8de
4 changed files with 384 additions and 414 deletions

View file

@ -1,8 +1,7 @@
use std::{
fmt,
io::{Read, Seek, Write},
};
use std::io::{self, Read, Result as IoResult, Seek, Write};
use std::fmt;
use csv::{Reader as CsvReader, StringRecordsIntoIter};
use milli::documents::DocumentBatchBuilder;
use serde_json::{Deserializer, Map, Value};
@ -12,6 +11,7 @@ type Result<T> = std::result::Result<T, DocumentFormatError>;
pub enum PayloadType {
Jsonl,
Json,
Csv,
}
impl fmt::Display for PayloadType {
@ -19,6 +19,7 @@ impl fmt::Display for PayloadType {
match self {
PayloadType::Jsonl => write!(f, "ndjson"),
PayloadType::Json => write!(f, "json"),
PayloadType::Csv => write!(f, "csv"),
}
}
}
@ -34,7 +35,7 @@ pub enum DocumentFormatError {
),
}
internal_error!(DocumentFormatError: milli::documents::Error);
internal_error!(DocumentFormatError: milli::documents::Error, io::Error);
macro_rules! malformed {
($type:path, $e:expr) => {
@ -42,6 +43,20 @@ macro_rules! malformed {
};
}
pub fn read_csv(input: impl Read, writer: impl Write + Seek) -> Result<()> {
let mut builder = DocumentBatchBuilder::new(writer).unwrap();
let iter = CsvDocumentIter::from_reader(input)?;
for doc in iter {
let doc = doc?;
builder.add_documents(doc).unwrap();
}
builder.finish().unwrap();
Ok(())
}
/// read jsonl from input and write an obkv batch to writer.
pub fn read_jsonl(input: impl Read, writer: impl Write + Seek) -> Result<()> {
let mut builder = DocumentBatchBuilder::new(writer)?;
@ -68,3 +83,281 @@ pub fn read_json(input: impl Read, writer: impl Write + Seek) -> Result<()> {
Ok(())
}
enum AllowedType {
String,
Number,
}
fn parse_csv_header(header: &str) -> (String, AllowedType) {
// if there are several separators we only split on the last one.
match header.rsplit_once(':') {
Some((field_name, field_type)) => match field_type {
"string" => (field_name.to_string(), AllowedType::String),
"number" => (field_name.to_string(), AllowedType::Number),
// if the pattern isn't reconized, we keep the whole field.
_otherwise => (header.to_string(), AllowedType::String),
},
None => (header.to_string(), AllowedType::String),
}
}
pub struct CsvDocumentIter<R>
where
R: Read,
{
documents: StringRecordsIntoIter<R>,
headers: Vec<(String, AllowedType)>,
}
impl<R: Read> CsvDocumentIter<R> {
pub fn from_reader(reader: R) -> IoResult<Self> {
let mut records = CsvReader::from_reader(reader);
let headers = records
.headers()?
.into_iter()
.map(parse_csv_header)
.collect();
Ok(Self {
documents: records.into_records(),
headers,
})
}
}
impl<R: Read> Iterator for CsvDocumentIter<R> {
type Item = Result<Map<String, Value>>;
fn next(&mut self) -> Option<Self::Item> {
let csv_document = self.documents.next()?;
match csv_document {
Ok(csv_document) => {
let mut document = Map::new();
for ((field_name, field_type), value) in
self.headers.iter().zip(csv_document.into_iter())
{
let parsed_value = (|| match field_type {
AllowedType::Number => malformed!(PayloadType::Csv, value
.parse::<f64>()
.map(Value::from)),
AllowedType::String => Ok(Value::String(value.to_string())),
})();
match parsed_value {
Ok(value) => drop(document.insert(field_name.to_string(), value)),
Err(e) => return Some(Err(e)),
}
}
Some(Ok(document))
}
Err(e) => Some(Err(DocumentFormatError::MalformedPayload(Box::new(e), PayloadType::Csv))),
}
}
}
#[cfg(test)]
mod test {
use serde_json::json;
use super::*;
#[test]
fn simple_csv_document() {
let documents = r#"city,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn coma_in_field() {
let documents = r#"city,country,pop
"Boston","United, States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United, States",
"pop": "4628910",
})
);
}
#[test]
fn quote_in_field() {
let documents = r#"city,country,pop
"Boston","United"" States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United\" States",
"pop": "4628910",
})
);
}
#[test]
fn integer_in_field() {
let documents = r#"city,country,pop:number
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910.0,
})
);
}
#[test]
fn float_in_field() {
let documents = r#"city,country,pop:number
"Boston","United States","4628910.01""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910.01,
})
);
}
#[test]
fn several_colon_in_header() {
let documents = r#"city:love:string,country:state,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:love": "Boston",
"country:state": "United States",
"pop": "4628910",
})
);
}
#[test]
fn ending_by_colon_in_header() {
let documents = r#"city:,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn starting_by_colon_in_header() {
let documents = r#":city,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
":city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[ignore]
#[test]
fn starting_by_colon_in_header2() {
let documents = r#":string,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(dbg!(csv_iter.next().unwrap()).is_err());
}
#[test]
fn double_colon_in_header() {
let documents = r#"city::string,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn bad_type_in_header() {
let documents = r#"city,country:number,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
#[test]
fn bad_column_count1() {
let documents = r#"city,country,pop
"Boston","United States","4628910", "too much""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
#[test]
fn bad_column_count2() {
let documents = r#"city,country,pop
"Boston","United States""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
}

View file

@ -1,282 +0,0 @@
use super::error::{Result, UpdateLoopError};
use std::io::{Read, Result as IoResult};
use csv::{Reader as CsvReader, StringRecordsIntoIter};
use serde_json::{Map, Value};
enum AllowedType {
String,
Number,
}
fn parse_csv_header(header: &str) -> (String, AllowedType) {
// if there are several separators we only split on the last one.
match header.rsplit_once(':') {
Some((field_name, field_type)) => match field_type {
"string" => (field_name.to_string(), AllowedType::String),
"number" => (field_name.to_string(), AllowedType::Number),
// if the pattern isn't reconized, we keep the whole field.
_otherwise => (header.to_string(), AllowedType::String),
},
None => (header.to_string(), AllowedType::String),
}
}
pub struct CsvDocumentIter<R>
where
R: Read,
{
documents: StringRecordsIntoIter<R>,
headers: Vec<(String, AllowedType)>,
}
impl<R: Read> CsvDocumentIter<R> {
pub fn from_reader(reader: R) -> IoResult<Self> {
let mut records = CsvReader::from_reader(reader);
let headers = records
.headers()?
.into_iter()
.map(parse_csv_header)
.collect();
Ok(Self {
documents: records.into_records(),
headers,
})
}
}
impl<R: Read> Iterator for CsvDocumentIter<R> {
type Item = Result<Map<String, Value>>;
fn next(&mut self) -> Option<Self::Item> {
let csv_document = self.documents.next()?;
match csv_document {
Ok(csv_document) => {
let mut document = Map::new();
for ((field_name, field_type), value) in
self.headers.iter().zip(csv_document.into_iter())
{
let parsed_value = (|| match field_type {
AllowedType::Number => value
.parse::<f64>()
.map(Value::from)
.map_err(|e| UpdateLoopError::MalformedPayload(Box::new(e))),
AllowedType::String => Ok(Value::String(value.to_string())),
})();
match parsed_value {
Ok(value) => drop(document.insert(field_name.to_string(), value)),
Err(e) => return Some(Err(e)),
}
}
Some(Ok(document))
}
Err(e) => Some(Err(UpdateLoopError::MalformedPayload(Box::new(e)))),
}
}
}
#[cfg(test)]
mod test {
use serde_json::json;
use super::*;
#[test]
fn simple_csv_document() {
let documents = r#"city,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn coma_in_field() {
let documents = r#"city,country,pop
"Boston","United, States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United, States",
"pop": "4628910",
})
);
}
#[test]
fn quote_in_field() {
let documents = r#"city,country,pop
"Boston","United"" States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United\" States",
"pop": "4628910",
})
);
}
#[test]
fn integer_in_field() {
let documents = r#"city,country,pop:number
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910.0,
})
);
}
#[test]
fn float_in_field() {
let documents = r#"city,country,pop:number
"Boston","United States","4628910.01""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910.01,
})
);
}
#[test]
fn several_double_dot_in_header() {
let documents = r#"city:love:string,country:state,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:love": "Boston",
"country:state": "United States",
"pop": "4628910",
})
);
}
#[test]
fn ending_by_double_dot_in_header() {
let documents = r#"city:,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn starting_by_double_dot_in_header() {
let documents = r#":city,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
":city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn starting_by_double_dot_in_header2() {
let documents = r#":string,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
#[test]
fn double_double_dot_in_header() {
let documents = r#"city::string,country,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert_eq!(
Value::Object(csv_iter.next().unwrap().unwrap()),
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn bad_type_in_header() {
let documents = r#"city,country:number,pop
"Boston","United States","4628910""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
#[test]
fn bad_column_count1() {
let documents = r#"city,country,pop
"Boston","United States","4628910", "too much""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
#[test]
fn bad_column_count2() {
let documents = r#"city,country,pop
"Boston","United States""#;
let mut csv_iter = CsvDocumentIter::from_reader(documents.as_bytes()).unwrap();
assert!(csv_iter.next().unwrap().is_err());
}
}

View file

@ -1,10 +1,8 @@
mod csv_documents_iter;
pub mod error;
mod message;
pub mod status;
pub mod store;
use crate::index_controller::updates::csv_documents_iter::CsvDocumentIter;
use std::io;
use std::path::{Path, PathBuf};
use std::sync::atomic::AtomicBool;
@ -15,7 +13,6 @@ use async_stream::stream;
use bytes::Bytes;
use futures::{Stream, StreamExt};
use log::trace;
use milli::documents::DocumentBatchBuilder;
use milli::update::IndexDocumentsMethod;
use serde::{Deserialize, Serialize};
use tokio::sync::mpsc;
@ -24,13 +21,13 @@ use uuid::Uuid;
use self::error::{Result, UpdateLoopError};
pub use self::message::UpdateMsg;
use self::store::{UpdateStore, UpdateStoreInfo};
use crate::document_formats::read_json;
use crate::document_formats::{read_csv, read_json};
use crate::index::{Index, Settings, Unchecked};
use crate::index_controller::update_file_store::UpdateFileStore;
use status::UpdateStatus;
use super::index_resolver::HardStateIndexResolver;
use super::{DocumentAdditionFormat, Payload, Update};
use super::{DocumentAdditionFormat, Update};
pub type UpdateSender = mpsc::Sender<UpdateMsg>;
@ -198,6 +195,7 @@ impl UpdateLoop {
tokio::task::spawn_blocking(move || -> Result<_> {
match format {
DocumentAdditionFormat::Json => read_json(reader, &mut *update_file)?,
DocumentAdditionFormat::Csv => read_csv(reader, &mut *update_file)?,
}
update_file.persist()?;
@ -225,26 +223,6 @@ impl UpdateLoop {
Ok(status.into())
}
async fn documents_from_csv(&self, payload: Payload) -> Result<Uuid> {
let file_store = self.update_file_store.clone();
tokio::task::spawn_blocking(move || {
let (uuid, mut file) = file_store.new_update().unwrap();
let mut builder = DocumentBatchBuilder::new(&mut *file).unwrap();
let iter = CsvDocumentIter::from_reader(StreamReader::new(payload))?;
for doc in iter {
let doc = doc?;
builder.add_documents(doc).unwrap();
}
builder.finish().unwrap();
file.persist();
Ok(uuid)
})
.await?
}
async fn handle_list_updates(&self, uuid: Uuid) -> Result<Vec<UpdateStatus>> {
let update_store = self.store.clone();
tokio::task::spawn_blocking(move || {