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Introduce the field-id-docid-facet-values database

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This commit is contained in:
Clément Renault 2020-12-02 18:31:41 +01:00
parent 4ffbddf21f
commit 3cdf14d4c5
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GPG Key ID: 92ADA4E935E71FA4
11 changed files with 229 additions and 9 deletions
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36
src/heed_codec/facet/field_doc_id_facet_f64_codec.rs Normal file
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@ -0,0 +1,36 @@
use std::borrow::Cow;
use std::convert::TryInto;
use crate::{FieldId, DocumentId};
use crate::facet::value_encoding::f64_into_bytes;
pub struct FieldDocIdFacetF64Codec;
impl<'a> heed::BytesDecode<'a> for FieldDocIdFacetF64Codec {
type DItem = (FieldId, DocumentId, f64);
fn bytes_decode(bytes: &'a [u8]) -> Option<Self::DItem> {
let (field_id, bytes) = bytes.split_first()?;
let (document_id_bytes, bytes) = bytes.split_at(4);
let document_id = document_id_bytes.try_into().map(u32::from_be_bytes).ok()?;
let value = bytes[8..16].try_into().map(f64::from_be_bytes).ok()?;
Some((*field_id, document_id, value))
}
}
impl<'a> heed::BytesEncode<'a> for FieldDocIdFacetF64Codec {
type EItem = (FieldId, DocumentId, f64);
fn bytes_encode((field_id, document_id, value): &Self::EItem) -> Option<Cow<[u8]>> {
let mut bytes = Vec::with_capacity(1 + 4 + 8 + 8);
bytes.push(*field_id);
bytes.extend_from_slice(&document_id.to_be_bytes());
let value_bytes = f64_into_bytes(*value)?;
bytes.extend_from_slice(&value_bytes);
bytes.extend_from_slice(&value.to_be_bytes());
Some(Cow::Owned(bytes))
}
}

34
src/heed_codec/facet/field_doc_id_facet_i64_codec.rs Normal file
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@ -0,0 +1,34 @@
use std::borrow::Cow;
use std::convert::TryInto;
use crate::facet::value_encoding::{i64_into_bytes, i64_from_bytes};
use crate::{FieldId, DocumentId};
pub struct FieldDocIdFacetI64Codec;
impl<'a> heed::BytesDecode<'a> for FieldDocIdFacetI64Codec {
type DItem = (FieldId, DocumentId, i64);
fn bytes_decode(bytes: &'a [u8]) -> Option<Self::DItem> {
let (field_id, bytes) = bytes.split_first()?;
let (document_id_bytes, bytes) = bytes.split_at(4);
let document_id = document_id_bytes.try_into().map(u32::from_be_bytes).ok()?;
let value = bytes[..8].try_into().map(i64_from_bytes).ok()?;
Some((*field_id, document_id, value))
}
}
impl<'a> heed::BytesEncode<'a> for FieldDocIdFacetI64Codec {
type EItem = (FieldId, DocumentId, i64);
fn bytes_encode((field_id, document_id, value): &Self::EItem) -> Option<Cow<[u8]>> {
let mut bytes = Vec::with_capacity(1 + 4 + 8);
bytes.push(*field_id);
bytes.extend_from_slice(&document_id.to_be_bytes());
bytes.extend_from_slice(&i64_into_bytes(*value));
Some(Cow::Owned(bytes))
}
}

31
src/heed_codec/facet/field_doc_id_facet_string_codec.rs Normal file
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@ -0,0 +1,31 @@
use std::borrow::Cow;
use std::convert::TryInto;
use std::str;
use crate::{FieldId, DocumentId};
pub struct FieldDocIdFacetStringCodec;
impl<'a> heed::BytesDecode<'a> for FieldDocIdFacetStringCodec {
type DItem = (FieldId, DocumentId, &'a str);
fn bytes_decode(bytes: &'a [u8]) -> Option<Self::DItem> {
let (field_id, bytes) = bytes.split_first()?;
let (document_id_bytes, bytes) = bytes.split_at(4);
let document_id = document_id_bytes.try_into().map(u32::from_be_bytes).ok()?;
let value = str::from_utf8(bytes).ok()?;
Some((*field_id, document_id, value))
}
}
impl<'a> heed::BytesEncode<'a> for FieldDocIdFacetStringCodec {
type EItem = (FieldId, DocumentId, &'a str);
fn bytes_encode((field_id, document_id, value): &Self::EItem) -> Option<Cow<[u8]>> {
let mut bytes = Vec::with_capacity(1 + 4 + value.len());
bytes.push(*field_id);
bytes.extend_from_slice(&document_id.to_be_bytes());
bytes.extend_from_slice(value.as_bytes());
Some(Cow::Owned(bytes))
}
}

6
src/heed_codec/facet/mod.rs
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@ -1,7 +1,13 @@
mod facet_level_value_f64_codec;
mod facet_level_value_i64_codec;
mod facet_value_string_codec;
mod field_doc_id_facet_f64_codec;
mod field_doc_id_facet_i64_codec;
mod field_doc_id_facet_string_codec;
pub use self::facet_level_value_f64_codec::FacetLevelValueF64Codec;
pub use self::facet_level_value_i64_codec::FacetLevelValueI64Codec;
pub use self::facet_value_string_codec::FacetValueStringCodec;
pub use self::field_doc_id_facet_f64_codec::FieldDocIdFacetF64Codec;
pub use self::field_doc_id_facet_i64_codec::FieldDocIdFacetI64Codec;
pub use self::field_doc_id_facet_string_codec::FieldDocIdFacetStringCodec;

6
src/index.rs
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@ -42,13 +42,15 @@ pub struct Index {
pub word_pair_proximity_docids: Database<StrStrU8Codec, CboRoaringBitmapCodec>,
/// Maps the facet field id and the globally ordered value with the docids that corresponds to it.
pub facet_field_id_value_docids: Database<ByteSlice, CboRoaringBitmapCodec>,
/// Maps the document id, the facet field id and the globally ordered value.
pub field_id_docid_facet_values: Database<ByteSlice, Unit>,
/// Maps the document id to the document as an obkv store.
pub documents: Database<OwnedType<BEU32>, ObkvCodec>,
}
impl Index {
pub fn new<P: AsRef<Path>>(mut options: heed::EnvOpenOptions, path: P) -> anyhow::Result<Index> {
options.max_dbs(6);
options.max_dbs(7);
let env = options.open(path)?;
let main = env.create_poly_database(Some("main"))?;
@ -56,6 +58,7 @@ impl Index {
let docid_word_positions = env.create_database(Some("docid-word-positions"))?;
let word_pair_proximity_docids = env.create_database(Some("word-pair-proximity-docids"))?;
let facet_field_id_value_docids = env.create_database(Some("facet-field-id-value-docids"))?;
let field_id_docid_facet_values = env.create_database(Some("field-id-docid-facet-values"))?;
let documents = env.create_database(Some("documents"))?;
Ok(Index {
@ -65,6 +68,7 @@ impl Index {
docid_word_positions,
word_pair_proximity_docids,
facet_field_id_value_docids,
field_id_docid_facet_values,
documents,
})
}

1
src/subcommand/infos.rs
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@ -297,6 +297,7 @@ fn biggest_value_sizes(index: &Index, rtxn: &heed::RoTxn, limit: usize) -> anyho
docid_word_positions,
word_pair_proximity_docids,
facet_field_id_value_docids,
field_id_docid_facet_values: _,
documents,
} = index;

2
src/update/clear_documents.rs
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@ -19,6 +19,7 @@ impl<'t, 'u, 'i> ClearDocuments<'t, 'u, 'i> {
docid_word_positions,
word_pair_proximity_docids,
facet_field_id_value_docids,
field_id_docid_facet_values,
documents,
} = self.index;
@ -41,6 +42,7 @@ impl<'t, 'u, 'i> ClearDocuments<'t, 'u, 'i> {
docid_word_positions.clear(self.wtxn)?;
word_pair_proximity_docids.clear(self.wtxn)?;
facet_field_id_value_docids.clear(self.wtxn)?;
field_id_docid_facet_values.clear(self.wtxn)?;
documents.clear(self.wtxn)?;
Ok(number_of_documents)

39
src/update/delete_documents.rs
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@ -2,7 +2,9 @@ use fst::IntoStreamer;
use heed::types::ByteSlice;
use roaring::RoaringBitmap;
use crate::facet::FacetType;
use crate::{Index, BEU32, SmallString32, ExternalDocumentsIds};
use crate::heed_codec::facet::{FieldDocIdFacetStringCodec, FieldDocIdFacetF64Codec, FieldDocIdFacetI64Codec};
use super::ClearDocuments;
pub struct DeleteDocuments<'t, 'u, 'i> {
@ -75,6 +77,7 @@ impl<'t, 'u, 'i> DeleteDocuments<'t, 'u, 'i> {
docid_word_positions,
word_pair_proximity_docids,
facet_field_id_value_docids,
field_id_docid_facet_values,
documents,
} = self.index;
@ -186,10 +189,42 @@ impl<'t, 'u, 'i> DeleteDocuments<'t, 'u, 'i> {
// Remove the documents ids from the faceted documents ids.
let faceted_fields = self.index.faceted_fields(self.wtxn)?;
for (field_id, _) in faceted_fields {
for (field_id, facet_type) in faceted_fields {
let mut docids = self.index.faceted_documents_ids(self.wtxn, field_id)?;
docids.difference_with(&self.documents_ids);
self.index.put_faceted_documents_ids(self.wtxn, field_id, &docids)?;
// We delete the entries that are part of the documents ids.
let iter = field_id_docid_facet_values.prefix_iter_mut(self.wtxn, &[field_id])?;
match facet_type {
FacetType::String => {
let mut iter = iter.remap_key_type::<FieldDocIdFacetStringCodec>();
while let Some(result) = iter.next() {
let ((_fid, docid, _value), ()) = result?;
if self.documents_ids.contains(docid) {
iter.del_current()?;
}
}
},
FacetType::Float => {
let mut iter = iter.remap_key_type::<FieldDocIdFacetF64Codec>();
while let Some(result) = iter.next() {
let ((_fid, docid, _value), ()) = result?;
if self.documents_ids.contains(docid) {
iter.del_current()?;
}
}
},
FacetType::Integer => {
let mut iter = iter.remap_key_type::<FieldDocIdFacetI64Codec>();
while let Some(result) = iter.next() {
let ((_fid, docid, _value), ()) = result?;
if self.documents_ids.contains(docid) {
iter.del_current()?;
}
}
},
}
}
// We delete the documents ids that are under the facet field id values.
@ -205,6 +240,8 @@ impl<'t, 'u, 'i> DeleteDocuments<'t, 'u, 'i> {
}
}
drop(iter);
Ok(self.documents_ids.len() as usize)
}
}

8
src/update/index_documents/merge_function.rs
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@ -1,6 +1,6 @@
use std::borrow::Cow;
use anyhow::{bail, ensure};
use anyhow::{bail, ensure, Context};
use bstr::ByteSlice as _;
use fst::IntoStreamer;
use roaring::RoaringBitmap;
@ -42,6 +42,12 @@ pub fn docid_word_positions_merge(key: &[u8], _values: &[Cow<[u8]>]) -> anyhow::
bail!("merging docid word positions is an error ({:?})", key.as_bstr())
}
pub fn field_id_docid_facet_values_merge(_key: &[u8], values: &[Cow<[u8]>]) -> anyhow::Result<Vec<u8>> {
let first = values.first().context("no value to merge")?;
ensure!(values.iter().all(|v| v == first), "invalid field id docid facet value merging");
Ok(first.to_vec())
}
pub fn words_pairs_proximities_docids_merge(_key: &[u8], values: &[Cow<[u8]>]) -> anyhow::Result<Vec<u8>> {
cbo_roaring_bitmap_merge(values)
}

23
src/update/index_documents/mod.rs
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@ -21,6 +21,7 @@ use self::store::{Store, Readers};
use self::merge_function::{
main_merge, word_docids_merge, words_pairs_proximities_docids_merge,
docid_word_positions_merge, documents_merge, facet_field_value_docids_merge,
field_id_docid_facet_values_merge,
};
pub use self::transform::{Transform, TransformOutput};
@ -395,6 +396,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
let mut docid_word_positions_readers = Vec::with_capacity(readers.len());
let mut words_pairs_proximities_docids_readers = Vec::with_capacity(readers.len());
let mut facet_field_value_docids_readers = Vec::with_capacity(readers.len());
let mut field_id_docid_facet_values_readers = Vec::with_capacity(readers.len());
let mut documents_readers = Vec::with_capacity(readers.len());
readers.into_iter().for_each(|readers| {
let Readers {
@ -403,6 +405,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
docid_word_positions,
words_pairs_proximities_docids,
facet_field_value_docids,
field_id_docid_facet_values,
documents
} = readers;
main_readers.push(main);
@ -410,6 +413,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
docid_word_positions_readers.push(docid_word_positions);
words_pairs_proximities_docids_readers.push(words_pairs_proximities_docids);
facet_field_value_docids_readers.push(facet_field_value_docids);
field_id_docid_facet_values_readers.push(field_id_docid_facet_values);
documents_readers.push(documents);
});
@ -453,6 +457,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
docid_word_positions_readers,
documents_readers,
words_pairs_proximities_docids_readers,
field_id_docid_facet_values_readers,
)) as anyhow::Result<_>
})?;
@ -461,6 +466,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
docid_word_positions_readers,
documents_readers,
words_pairs_proximities_docids_readers,
field_id_docid_facet_values_readers,
) = readers;
let mut documents_ids = self.index.documents_ids(self.wtxn)?;
@ -488,7 +494,7 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
self.index.put_documents_ids(self.wtxn, &documents_ids)?;
let mut database_count = 0;
let total_databases = 6;
let total_databases = 7;
progress_callback(UpdateIndexingStep::MergeDataIntoFinalDatabase {
databases_seen: 0,
@ -525,6 +531,21 @@ impl<'t, 'u, 'i, 'a> IndexDocuments<'t, 'u, 'i, 'a> {
total_databases,
});
debug!("Writing the field id docid facet values into LMDB on disk...");
merge_into_lmdb_database(
self.wtxn,
*self.index.field_id_docid_facet_values.as_polymorph(),
field_id_docid_facet_values_readers,
field_id_docid_facet_values_merge,
write_method,
)?;
database_count += 1;
progress_callback(UpdateIndexingStep::MergeDataIntoFinalDatabase {
databases_seen: database_count,
total_databases,
});
debug!("Writing the words pairs proximities docids into LMDB on disk...");
merge_into_lmdb_database(
self.wtxn,

52
src/update/index_documents/store.rs
View File

@ -20,6 +20,7 @@ use tempfile::tempfile;
use crate::facet::FacetType;
use crate::heed_codec::{BoRoaringBitmapCodec, CboRoaringBitmapCodec};
use crate::heed_codec::facet::{FacetValueStringCodec, FacetLevelValueF64Codec, FacetLevelValueI64Codec};
use crate::heed_codec::facet::{FieldDocIdFacetStringCodec, FieldDocIdFacetF64Codec, FieldDocIdFacetI64Codec};
use crate::tokenizer::{simple_tokenizer, only_token};
use crate::update::UpdateIndexingStep;
use crate::{json_to_string, SmallVec8, SmallVec32, SmallString32, Position, DocumentId, FieldId};
@ -27,7 +28,7 @@ use crate::{json_to_string, SmallVec8, SmallVec32, SmallString32, Position, Docu
use super::{MergeFn, create_writer, create_sorter, writer_into_reader};
use super::merge_function::{
main_merge, word_docids_merge, words_pairs_proximities_docids_merge,
facet_field_value_docids_merge,
facet_field_value_docids_merge, field_id_docid_facet_values_merge,
};
const LMDB_MAX_KEY_LENGTH: usize = 511;
@ -42,6 +43,7 @@ pub struct Readers {
pub docid_word_positions: Reader<FileFuse>,
pub words_pairs_proximities_docids: Reader<FileFuse>,
pub facet_field_value_docids: Reader<FileFuse>,
pub field_id_docid_facet_values: Reader<FileFuse>,
pub documents: Reader<FileFuse>,
}
@ -65,6 +67,7 @@ pub struct Store {
word_docids_sorter: Sorter<MergeFn>,
words_pairs_proximities_docids_sorter: Sorter<MergeFn>,
facet_field_value_docids_sorter: Sorter<MergeFn>,
field_id_docid_facet_values_sorter: Sorter<MergeFn>,
// MTBL writers
docid_word_positions_writer: Writer<File>,
documents_writer: Writer<File>,
@ -118,6 +121,14 @@ impl Store {
max_nb_chunks,
max_memory,
);
let field_id_docid_facet_values_sorter = create_sorter(
field_id_docid_facet_values_merge,
chunk_compression_type,
chunk_compression_level,
chunk_fusing_shrink_size,
max_nb_chunks,
Some(1024 * 1024 * 1024), // 1MB
);
let documents_writer = tempfile().and_then(|f| {
create_writer(chunk_compression_type, chunk_compression_level, f)
@ -146,6 +157,7 @@ impl Store {
word_docids_sorter,
words_pairs_proximities_docids_sorter,
facet_field_value_docids_sorter,
field_id_docid_facet_values_sorter,
// MTBL writers
docid_word_positions_writer,
documents_writer,
@ -181,6 +193,8 @@ impl Store {
id: DocumentId,
) -> anyhow::Result<()>
{
Self::write_field_id_docid_facet_value(&mut self.field_id_docid_facet_values_sorter, field_id, id, &field_value)?;
let key = (field_id, field_value);
// if get_refresh finds the element it is assured to be at the end of the linked hash map.
match self.facet_field_value_docids.get_refresh(&key) {
@ -192,7 +206,7 @@ impl Store {
// one element, this way next time we insert we doesn't grow the capacity.
if self.facet_field_value_docids.len() == self.facet_field_value_docids_limit {
// Removing the front element is equivalent to removing the LRU element.
Self::write_docid_facet_field_values(
Self::write_facet_field_value_docids(
&mut self.facet_field_value_docids_sorter,
self.facet_field_value_docids.pop_front(),
)?;
@ -326,11 +340,11 @@ impl Store {
Ok(())
}
fn write_docid_facet_field_values<I>(
fn write_facet_field_value_docids<I>(
sorter: &mut Sorter<MergeFn>,
iter: I,
) -> anyhow::Result<()>
where I: IntoIterator<Item=((u8, FacetValue), RoaringBitmap)>
where I: IntoIterator<Item=((FieldId, FacetValue), RoaringBitmap)>
{
use FacetValue::*;
@ -351,6 +365,29 @@ impl Store {
Ok(())
}
fn write_field_id_docid_facet_value(
sorter: &mut Sorter<MergeFn>,
field_id: FieldId,
document_id: DocumentId,
value: &FacetValue,
) -> anyhow::Result<()>
{
use FacetValue::*;
let result = match value {
String(s) => FieldDocIdFacetStringCodec::bytes_encode(&(field_id, document_id, s)).map(Cow::into_owned),
Float(f) => FieldDocIdFacetF64Codec::bytes_encode(&(field_id, document_id, **f)).map(Cow::into_owned),
Integer(i) => FieldDocIdFacetI64Codec::bytes_encode(&(field_id, document_id, *i)).map(Cow::into_owned),
};
let key = result.context("could not serialize facet key")?;
if lmdb_key_valid_size(&key) {
sorter.insert(&key, &[])?;
}
Ok(())
}
fn write_word_docids<I>(sorter: &mut Sorter<MergeFn>, iter: I) -> anyhow::Result<()>
where I: IntoIterator<Item=(SmallVec32<u8>, RoaringBitmap)>
{
@ -463,7 +500,7 @@ impl Store {
&mut self.words_pairs_proximities_docids_sorter,
self.words_pairs_proximities_docids,
)?;
Self::write_docid_facet_field_values(
Self::write_facet_field_value_docids(
&mut self.facet_field_value_docids_sorter,
self.facet_field_value_docids,
)?;
@ -491,10 +528,14 @@ impl Store {
let mut facet_field_value_docids_wtr = tempfile().and_then(|f| create_writer(comp_type, comp_level, f))?;
self.facet_field_value_docids_sorter.write_into(&mut facet_field_value_docids_wtr)?;
let mut field_id_docid_facet_values_wtr = tempfile().and_then(|f| create_writer(comp_type, comp_level, f))?;
self.field_id_docid_facet_values_sorter.write_into(&mut field_id_docid_facet_values_wtr)?;
let main = writer_into_reader(main_wtr, shrink_size)?;
let word_docids = writer_into_reader(word_docids_wtr, shrink_size)?;
let words_pairs_proximities_docids = writer_into_reader(words_pairs_proximities_docids_wtr, shrink_size)?;
let facet_field_value_docids = writer_into_reader(facet_field_value_docids_wtr, shrink_size)?;
let field_id_docid_facet_values = writer_into_reader(field_id_docid_facet_values_wtr, shrink_size)?;
let docid_word_positions = writer_into_reader(self.docid_word_positions_writer, shrink_size)?;
let documents = writer_into_reader(self.documents_writer, shrink_size)?;
@ -504,6 +545,7 @@ impl Store {
docid_word_positions,
words_pairs_proximities_docids,
facet_field_value_docids,
field_id_docid_facet_values,
documents,
})
}