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Code Issues Releases Wiki Activity

Introduce the validate_documents_batch function

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This commit is contained in:
Kerollmops 2022-06-14 18:12:15 +02:00
parent cefffde9af
commit 0146175fe6
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7 changed files with 208 additions and 73 deletions
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36
milli/src/documents/builder.rs
View File

@ -180,24 +180,10 @@ fn parse_csv_header(header: &str) -> (&str, AllowedType) {
mod test {
use std::io::Cursor;
use serde_json::{json, Map};
use serde_json::json;
use super::*;
use crate::documents::DocumentsBatchReader;
use crate::FieldId;
fn obkv_to_value(obkv: &obkv::KvReader<FieldId>, index: &DocumentsBatchIndex) -> Value {
let mut map = Map::new();
for (fid, value) in obkv.iter() {
let field_name = index.name(fid).unwrap().clone();
let value: Value = serde_json::from_slice(value).unwrap();
map.insert(field_name.to_string(), value);
}
Value::Object(map)
}
use crate::documents::{obkv_to_object, DocumentsBatchReader};
#[test]
fn add_single_documents_json() {
@ -272,7 +258,7 @@ mod test {
DocumentsBatchReader::from_reader(Cursor::new(vector)).unwrap().into_cursor();
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -301,7 +287,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -328,7 +314,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -355,7 +341,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -382,7 +368,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -409,7 +395,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -436,7 +422,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -463,7 +449,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
@ -507,7 +493,7 @@ mod test {
let index = cursor.documents_batch_index().clone();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_value(&doc, &index);
let val = obkv_to_object(&doc, &index).map(Value::from).unwrap();
assert_eq!(
val,

28
milli/src/documents/mod.rs
View File

@ -6,15 +6,30 @@ use std::io;
use bimap::BiHashMap;
pub use builder::DocumentsBatchBuilder;
use obkv::KvReader;
pub use reader::{DocumentsBatchCursor, DocumentsBatchReader};
use serde::{Deserialize, Serialize};
use crate::FieldId;
use crate::error::{FieldIdMapMissingEntry, InternalError};
use crate::{FieldId, Object, Result};
/// The key that is used to store the `DocumentsBatchIndex` datastructure,
/// it is the absolute last key of the list.
const DOCUMENTS_BATCH_INDEX_KEY: [u8; 8] = u64::MAX.to_be_bytes();
/// Helper function to convert an obkv reader into a JSON object.
pub fn obkv_to_object(obkv: &KvReader<FieldId>, index: &DocumentsBatchIndex) -> Result<Object> {
obkv.iter()
.map(|(field_id, value)| {
let field_name = index.name(field_id).ok_or_else(|| {
FieldIdMapMissingEntry::FieldId { field_id, process: "obkv_to_object" }
})?;
let value = serde_json::from_slice(value).map_err(InternalError::SerdeJson)?;
Ok((field_name.to_string(), value))
})
.collect()
}
/// A bidirectional map that links field ids to their name in a document batch.
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct DocumentsBatchIndex(pub BiHashMap<FieldId, String>);
@ -48,11 +63,12 @@ impl DocumentsBatchIndex {
self.0.get_by_left(&id).map(AsRef::as_ref)
}
pub fn recreate_json(
&self,
document: &obkv::KvReaderU16,
) -> Result<serde_json::Map<String, serde_json::Value>, crate::Error> {
let mut map = serde_json::Map::new();
pub fn id(&self, name: &str) -> Option<FieldId> {
self.0.get_by_right(name).cloned()
}
pub fn recreate_json(&self, document: &obkv::KvReaderU16) -> Result<Object> {
let mut map = Object::new();
for (k, v) in document.iter() {
// TODO: TAMO: update the error type

6
milli/src/error.rs
View File

@ -141,10 +141,16 @@ only composed of alphanumeric characters (a-z A-Z 0-9), hyphens (-) and undersco
#[derive(Error, Debug)]
pub enum GeoError {
#[error("The `_geo` field in the document with the id: `{document_id}` is not an object. Was expecting an object with the `_geo.lat` and `_geo.lng` fields but instead got `{value}`.")]
NotAnObject { document_id: Value, value: Value },
#[error("Could not find latitude nor longitude in the document with the id: `{document_id}`. Was expecting `_geo.lat` and `_geo.lng` fields.")]
MissingLatitudeAndLongitude { document_id: Value },
#[error("Could not find latitude in the document with the id: `{document_id}`. Was expecting a `_geo.lat` field.")]
MissingLatitude { document_id: Value },
#[error("Could not find longitude in the document with the id: `{document_id}`. Was expecting a `_geo.lng` field.")]
MissingLongitude { document_id: Value },
#[error("Could not parse latitude nor longitude in the document with the id: `{document_id}`. Was expecting a number but instead got `{lat}` and `{lng}`.")]
BadLatitudeAndLongitude { document_id: Value, lat: Value, lng: Value },
#[error("Could not parse latitude in the document with the id: `{document_id}`. Was expecting a number but instead got `{value}`.")]
BadLatitude { document_id: Value, value: Value },
#[error("Could not parse longitude in the document with the id: `{document_id}`. Was expecting a number but instead got `{value}`.")]

9
milli/src/update/index_documents/extract/extract_geo_points.rs
View File

@ -7,6 +7,7 @@ use serde_json::Value;
use super::helpers::{create_writer, writer_into_reader, GrenadParameters};
use crate::error::GeoError;
use crate::update::index_documents::extract_float_from_value;
use crate::{FieldId, InternalError, Result};
/// Extracts the geographical coordinates contained in each document under the `_geo` field.
@ -61,11 +62,3 @@ pub fn extract_geo_points<R: io::Read + io::Seek>(
Ok(writer_into_reader(writer)?)
}
fn extract_float_from_value(value: Value) -> StdResult<f64, Value> {
match value {
Value::Number(ref n) => n.as_f64().ok_or(value),
Value::String(ref s) => s.parse::<f64>().map_err(|_| value),
value => Err(value),
}
}

36
milli/src/update/index_documents/mod.rs
View File

@ -2,11 +2,13 @@ mod extract;
mod helpers;
mod transform;
mod typed_chunk;
mod validate;
use std::collections::HashSet;
use std::io::{Cursor, Read, Seek};
use std::iter::FromIterator;
use std::num::{NonZeroU32, NonZeroUsize};
use std::result::Result as StdResult;
use crossbeam_channel::{Receiver, Sender};
use heed::types::Str;
@ -25,13 +27,19 @@ pub use self::helpers::{
};
use self::helpers::{grenad_obkv_into_chunks, GrenadParameters};
pub use self::transform::{Transform, TransformOutput};
use crate::documents::DocumentsBatchReader;
use self::validate::validate_documents_batch;
pub use self::validate::{
extract_float_from_value, validate_document_id, validate_document_id_from_json,
validate_geo_from_json,
};
use crate::documents::{obkv_to_object, DocumentsBatchReader};
use crate::error::UserError;
pub use crate::update::index_documents::helpers::CursorClonableMmap;
use crate::update::{
self, Facets, IndexerConfig, UpdateIndexingStep, WordPrefixDocids,
WordPrefixPairProximityDocids, WordPrefixPositionDocids, WordsPrefixesFst,
};
use crate::{Index, Result, RoaringBitmapCodec, UserError};
use crate::{Index, Result, RoaringBitmapCodec};
static MERGED_DATABASE_COUNT: usize = 7;
static PREFIX_DATABASE_COUNT: usize = 5;
@ -117,19 +125,27 @@ where
/// Adds a batch of documents to the current builder.
///
/// Since the documents are progressively added to the writer, a failure will cause a stale
/// builder, and the builder must be discarded.
/// Since the documents are progressively added to the writer, a failure will cause only
/// return an error and not the `IndexDocuments` struct as it is invalid to use it afterward.
///
/// Returns the number of documents added to the builder.
pub fn add_documents<R>(&mut self, reader: DocumentsBatchReader<R>) -> Result<u64>
where
R: Read + Seek,
{
pub fn add_documents<R: Read + Seek>(
mut self,
reader: DocumentsBatchReader<R>,
) -> Result<(Self, StdResult<u64, UserError>)> {
// Early return when there is no document to add
if reader.is_empty() {
return Ok(0);
return Ok((self, Ok(0)));
}
// We check for user errors in this validator and if there is one, we can return
// the `IndexDocument` struct as it is valid to send more documents into it.
// However, if there is an internal error we throw it away!
let reader = match validate_documents_batch(self.wtxn, self.index, reader)? {
Ok(reader) => reader,
Err(user_error) => return Ok((self, Err(user_error))),
};
let indexed_documents = self
.transform
.as_mut()
@ -139,7 +155,7 @@ where
self.added_documents += indexed_documents;
Ok(indexed_documents)
Ok((self, Ok(indexed_documents)))
}
#[logging_timer::time("IndexDocuments::{}")]

26
milli/src/update/index_documents/transform.rs
View File

@ -17,6 +17,7 @@ use super::{validate_document_id, IndexDocumentsMethod, IndexerConfig};
use crate::documents::{DocumentsBatchIndex, DocumentsBatchReader};
use crate::error::{Error, InternalError, UserError};
use crate::index::db_name;
use crate::update::index_documents::validate_document_id_from_json;
use crate::update::{AvailableDocumentsIds, UpdateIndexingStep};
use crate::{
ExternalDocumentsIds, FieldDistribution, FieldId, FieldIdMapMissingEntry, FieldsIdsMap, Index,
@ -782,14 +783,6 @@ fn compute_primary_key_pair(
}
}
fn validate_document_id(document_id: &str) -> Option<&str> {
let document_id = document_id.trim();
Some(document_id).filter(|id| {
!id.is_empty()
&& id.chars().all(|c| matches!(c, 'a'..='z' | 'A'..='Z' | '0'..='9' | '-' | '_'))
})
}
/// Drops all the value of type `U` in vec, and reuses the allocation to create a `Vec<T>`.
///
/// The size and alignment of T and U must match.
@ -813,22 +806,7 @@ fn update_primary_key<'a>(
) -> Result<Cow<'a, str>> {
match field_buffer_cache.iter_mut().find(|(id, _)| *id == primary_key_id) {
Some((_, bytes)) => {
let value = match serde_json::from_slice(bytes).map_err(InternalError::SerdeJson)? {
Value::String(string) => match validate_document_id(&string) {
Some(s) if s.len() == string.len() => string,
Some(s) => s.to_string(),
None => {
return Err(UserError::InvalidDocumentId {
document_id: Value::String(string),
}
.into())
}
},
Value::Number(number) => number.to_string(),
content => {
return Err(UserError::InvalidDocumentId { document_id: content.clone() }.into())
}
};
let value = validate_document_id_from_json(bytes)??;
serde_json::to_writer(external_id_buffer, &value).map_err(InternalError::SerdeJson)?;
Ok(Cow::Owned(value))
}

140
milli/src/update/index_documents/validate.rs Normal file
View File

@ -0,0 +1,140 @@
use std::io::{Read, Seek};
use std::result::Result as StdResult;
use serde_json::Value;
use crate::error::{GeoError, InternalError, UserError};
use crate::update::index_documents::{obkv_to_object, DocumentsBatchReader};
use crate::{Index, Result};
/// This function validates a documents by checking that:
/// - we can infer a primary key,
/// - all the documents id exist and,
/// - the validity of them but also,
/// - the validity of the `_geo` field depending on the settings.
pub fn validate_documents_batch<R: Read + Seek>(
rtxn: &heed::RoTxn,
index: &Index,
reader: DocumentsBatchReader<R>,
) -> Result<StdResult<DocumentsBatchReader<R>, UserError>> {
let mut cursor = reader.into_cursor();
let documents_batch_index = cursor.documents_batch_index().clone();
// The primary key *field id* that has already been set for this index or the one
// we will guess by searching for the first key that contains "id" as a substring.
let (primary_key, primary_key_id) = match index.primary_key(rtxn)? {
Some(primary_key) => match documents_batch_index.id(primary_key) {
Some(id) => (primary_key, id),
None => {
return match cursor.next_document()? {
Some(first_document) => Ok(Err(UserError::MissingDocumentId {
primary_key: primary_key.to_string(),
document: obkv_to_object(&first_document, &documents_batch_index)?,
})),
// If there is no document in this batch the best we can do is to return this error.
None => Ok(Err(UserError::MissingPrimaryKey)),
};
}
},
None => {
let guessed = documents_batch_index
.iter()
.filter(|(_, name)| name.contains("id"))
.min_by_key(|(fid, _)| *fid);
match guessed {
Some((id, name)) => (name.as_str(), *id),
None => return Ok(Err(UserError::MissingPrimaryKey)),
}
}
};
// If the settings specifies that a _geo field must be used therefore we must check the
// validity of it in all the documents of this batch and this is when we return `Some`.
let geo_field_id = match documents_batch_index.id("_geo") {
Some(geo_field_id) if index.sortable_fields(rtxn)?.contains("_geo") => Some(geo_field_id),
_otherwise => None,
};
while let Some(document) = cursor.next_document()? {
let document_id = match document.get(primary_key_id) {
Some(document_id_bytes) => match validate_document_id_from_json(document_id_bytes)? {
Ok(document_id) => document_id,
Err(user_error) => return Ok(Err(user_error)),
},
None => {
return Ok(Err(UserError::MissingDocumentId {
primary_key: primary_key.to_string(),
document: obkv_to_object(&document, &documents_batch_index)?,
}))
}
};
if let Some(geo_value) = geo_field_id.and_then(|fid| document.get(fid)) {
if let Err(user_error) = validate_geo_from_json(Value::from(document_id), geo_value)? {
return Ok(Err(UserError::from(user_error)));
}
}
}
Ok(Ok(cursor.into_reader()))
}
/// Returns a trimmed version of the document id or `None` if it is invalid.
pub fn validate_document_id(document_id: &str) -> Option<&str> {
let id = document_id.trim();
if !id.is_empty()
&& id.chars().all(|c| matches!(c, 'a'..='z' | 'A'..='Z' | '0'..='9' | '-' | '_'))
{
Some(id)
} else {
None
}
}
/// Parses a Json encoded document id and validate it, returning a user error when it is one.
pub fn validate_document_id_from_json(bytes: &[u8]) -> Result<StdResult<String, UserError>> {
match serde_json::from_slice(bytes).map_err(InternalError::SerdeJson)? {
Value::String(string) => match validate_document_id(&string) {
Some(s) if s.len() == string.len() => Ok(Ok(string)),
Some(s) => Ok(Ok(s.to_string())),
None => {
return Ok(Err(UserError::InvalidDocumentId { document_id: Value::String(string) }))
}
},
Value::Number(number) => Ok(Ok(number.to_string())),
content => return Ok(Err(UserError::InvalidDocumentId { document_id: content.clone() })),
}
}
/// Try to extract an `f64` from a JSON `Value` and return the `Value`
/// in the `Err` variant if it failed.
pub fn extract_float_from_value(value: Value) -> StdResult<f64, Value> {
match value {
Value::Number(ref n) => n.as_f64().ok_or(value),
Value::String(ref s) => s.parse::<f64>().map_err(|_| value),
value => Err(value),
}
}
pub fn validate_geo_from_json(document_id: Value, bytes: &[u8]) -> Result<StdResult<(), GeoError>> {
let result = match serde_json::from_slice(bytes).map_err(InternalError::SerdeJson)? {
Value::Object(mut object) => match (object.remove("lat"), object.remove("lng")) {
(Some(lat), Some(lng)) => {
match (extract_float_from_value(lat), extract_float_from_value(lng)) {
(Ok(_), Ok(_)) => Ok(()),
(Err(value), Ok(_)) => Err(GeoError::BadLatitude { document_id, value }),
(Ok(_), Err(value)) => Err(GeoError::BadLongitude { document_id, value }),
(Err(lat), Err(lng)) => {
Err(GeoError::BadLatitudeAndLongitude { document_id, lat, lng })
}
}
}
(None, Some(_)) => Err(GeoError::MissingLatitude { document_id }),
(Some(_), None) => Err(GeoError::MissingLongitude { document_id }),
(None, None) => Err(GeoError::MissingLatitudeAndLongitude { document_id }),
},
value => Err(GeoError::NotAnObject { document_id, value }),
};
Ok(result)
}