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5af66b963d
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5af66b963d | ||
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53b0f00191 | ||
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711f8d8baf | ||
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8ef111bdcd |
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@ -1,7 +1,7 @@
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# Copyright 1999-2021 Gentoo Authors
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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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EAPI=8
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#CMAKE_MAKEFILE_GENERATOR="emake"
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#CMAKE_MAKEFILE_GENERATOR="emake"
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PYTHON_COMPAT=( python3_{10..11} )
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PYTHON_COMPAT=( python3_{10..11} )
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@ -11,18 +11,20 @@ inherit cmake distutils-r1 git-r3 ninja-utils
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#inherit cmake distutils-r1 git-r3 multilib ninja-utils
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#inherit cmake distutils-r1 git-r3 multilib ninja-utils
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GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
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GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
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NIFTI_HASH="65f801b9c2f1f15f4de4a19d45e6595c25765632"
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#NIFTI_HASH="65f801b9c2f1f15f4de4a19d45e6595c25765632"
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GIFTI_HASH="5eae81ba1e87ef3553df3b6ba585f12dc81a0030"
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NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
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#GIFTI_HASH="5eae81ba1e87ef3553df3b6ba585f12dc81a0030"
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GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="
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SRC_URI="
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https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz
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"
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"
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EGIT_REPO_URI="https://github.com/leej3/afni.git"
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#https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz
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EGIT_BRANCH="make_some_build_fixes_for_gentoo_packaging"
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EGIT_REPO_URI="https://github.com/TheChymera/afni.git"
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EGIT_BRANCH="packaging"
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SLOT="0"
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SLOT="0"
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LICENSE="GPL-3+"
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LICENSE="GPL-3+"
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@ -41,6 +43,7 @@ RDEPEND="
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media-libs/qhull
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media-libs/qhull
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media-video/mpeg-tools
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media-video/mpeg-tools
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sci-libs/gsl
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sci-libs/gsl
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sci-libs/gts
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sys-devel/llvm:*
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sys-devel/llvm:*
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sys-libs/libomp
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sys-libs/libomp
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dev-libs/libpthread-stubs
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dev-libs/libpthread-stubs
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@ -58,12 +61,11 @@ DEPEND="
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app-shells/tcsh
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app-shells/tcsh
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"
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"
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# Prospectively:
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# Prospectively:
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#sci-libs/gts
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#Update jpeg-compat to virtual/jpeg:0
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#Update jpeg-compat to virtual/jpeg:0
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# look for xmhtlm
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# look for xmhtlm
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#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
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src_prepare() {
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src_prepare() {
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tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
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cmake_src_prepare
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cmake_src_prepare
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@ -76,19 +78,21 @@ src_configure() {
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export GIT_REPO_VERSION=3.0.1.1
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export GIT_REPO_VERSION=3.0.1.1
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#export LDFLAGS="-lpthread ${LDFLAGS}"
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#export LDFLAGS="-lpthread ${LDFLAGS}"
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#-CC="$(tc-getCC)"
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#-CC="$(tc-getCC)"
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#-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}"
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#-DUSE_SYSTEM_GTS=OFF
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local mycmakeargs=(
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local mycmakeargs=(
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-GNinja
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-GNinja
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-DLIBDIR=/usr/$(get_libdir)
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-DLIBDIR=/usr/$(get_libdir)
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-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
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-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
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-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
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-DCOMP_COREBINARIES=ON
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-DCOMP_COREBINARIES=ON
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-DUSE_SYSTEM_NIFTI=OFF
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-DUSE_SYSTEM_NIFTI=OFF
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-DUSE_SYSTEM_GIFTI=OFF
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-DUSE_SYSTEM_GIFTI=OFF
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-DUSE_SYSTEM_XMHTML=OFF
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-DUSE_SYSTEM_XMHTML=OFF
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-DUSE_SYSTEM_GTS=OFF
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-DUSE_SYSTEM_GTS=ON
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-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}"
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-DCOMP_GUI=ON
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-DCOMP_GUI=ON
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@ -98,14 +102,13 @@ src_configure() {
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-DPython_FIND_VIRTUALENV=STANDARD
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-DPython_FIND_VIRTUALENV=STANDARD
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-DPython_FIND_STRATEGY=LOCATION
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-DPython_FIND_STRATEGY=LOCATION
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)
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)
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#-DBUILD_SHARED_LIBS=OFF
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tc-export CC
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tc-export CC
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cmake_src_configure
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cmake_src_configure
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}
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}
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src_compile() {
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src_compile() {
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cd ../afni-9999_build
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cd ../afni-9999_build
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pwd
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ls -la
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eninja || die
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eninja || die
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}
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}
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@ -113,6 +116,18 @@ src_compile() {
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src_install() {
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src_install() {
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cd ../afni-9999_build
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cd ../afni-9999_build
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# File collision, upstream confirmation here:
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# https://github.com/afni/afni/issues/558#issuecomment-1887693900
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#pwd
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#ls -lah
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#addpredict targets_built/libf2c.so
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#rm targets_built/libf2c.so
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#addpredict /usr/lib64/libf2c.so
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#addpredict /usr/bin/whirlgif
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#addpredict /usr/bin/mpeg_encode
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#exit
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rm targets_built/whirlgif
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rm targets_built/mpeg_encode
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DESTDIR=${D} eninja install
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DESTDIR=${D} eninja install
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# This is old example ants stuff.
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# This is old example ants stuff.
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#BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
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#BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
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