Applying updated old patch by John Lee

sci-biology/afni/afni-23.3.13_p20231212.ebuild

@@ -6,7 +6,7 @@ EAPI=7
 #CMAKE_MAKEFILE_GENERATOR="emake"
 PYTHON_COMPAT=( python3_{10..11} )
 
-inherit cmake distutils-r1 git-r3 multilib ninja-utils
+inherit cmake git-r3 multilib ninja-utils
 
 GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
 NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
@@ -60,12 +60,15 @@ DEPEND="
 #Update jpeg-compat to virtual/jpeg:0
 # look for xmhtlm
 
+PATCHES=(
+	"${FILESDIR}/afni-23.3.13_p20231212-libxhtml.patch"
+)
+
 src_prepare() {
 	tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
 	tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
 	tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
 	cmake_src_prepare
-	default
 	}
 
 src_configure() {
@@ -95,13 +98,14 @@ src_configure() {
 		-DCOMP_PYTHON=OFF
 		-DPython_FIND_VIRTUALENV=STANDARD
 		-DPython_FIND_STRATEGY=LOCATION
+		-DNDEBUG=ON
 	)
 	tc-export CC
 	cmake_src_configure
 }
 
 src_compile() {
-	cd ../afni-9999_build
+	cd ../${P}_build
 	pwd
 	ls -la
 	eninja || die
@@ -110,9 +114,9 @@ src_compile() {
 #/work/afni-9999/nifti_clib-65f801b9c2f1f15f4de4a19d45e6595c25765632
 
 src_install() {
-	cd ../afni-9999_build
+	cd ../${P}_build
+	#cd ../afni-9999_build
 	DESTDIR=${D} eninja install
-	#BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
 	#cmake_src_install
 	#cd "${S}/Scripts" || die "scripts dir not found"
 	#dobin *.sh

sci-biology/afni/files/afni-23.3.13_p20231212-libxhtml.patch

@@ -0,0 +1,40 @@
+diff --git a/cmake/afni_project_dependencies.cmake b/cmake/afni_project_dependencies.cmake
+index ac85256f0..a196cd56b 100644
+--- a/cmake/afni_project_dependencies.cmake
++++ b/cmake/afni_project_dependencies.cmake
+@@ -58,9 +58,9 @@ endif()
+ # software isolation then python is only searched for in this environment.
+ # For more details see:
+ # https://cmake.org/cmake/help/git-stage/module/FindPython.html
+-set(CMAKE_FIND_FRAMEWORK LAST)
+-set(Python_FIND_VIRTUALENV ONLY)
+-set(Python_FIND_STRATEGY LOCATION)
++set_if_not_defined(CMAKE_FIND_FRAMEWORK LAST)
++set_if_not_defined(Python_FIND_VIRTUALENV ONLY)
++set_if_not_defined(Python_FIND_STRATEGY LOCATION)
+ 
+ # python >=3.6 supported
+ find_package(Python 3.6 REQUIRED COMPONENTS Interpreter)
+diff --git a/src/XmHTML/CMakeLists.txt b/src/XmHTML/CMakeLists.txt
+index d7aa5e27d..50d595ec8 100644
+--- a/src/XmHTML/CMakeLists.txt
++++ b/src/XmHTML/CMakeLists.txt
+@@ -1,17 +1,14 @@
+ # TODO: install prefix should be used to distinguish from external library
+ cmake_minimum_required(VERSION 3.13)
+ project(XmHTML)
+-set(CMAKE_BUILD_TYPE "Release")
+
+ set(XMHTML_VERSION "1107")
+ set(XMHTML_ARCHIVE "1.1.7")
+
+-set(CMAKE_C_FLAGS_RELEASE "${CMAKE_C_FLAGS_RELEASE} -DNDEBUG")
+-
+ # Construct XmHTML  library
+ add_afni_library(XmHTML "")
+ target_compile_definitions(
+-  XmHTML PRIVATE "VERSION=${XMHTML_VERSION}" Motif HAVE_LIBJPEG HAVE_REGEX_H
++  XmHTML PRIVATE "VERSION=${XMHTML_VERSION}" Motif HAVE_LIBJPEG HAVE_REGEX_H NDEBUG
+ )
+ # add headers to XmHTML target_sources
+ add_subdirectory(include)