New afni CMake attempts

2024-12-22 04:40:17 +01:00 · 2023-12-12 12:16:43 -05:00 · 2023-12-12 12:16:43 -05:00 · bb1f37f0f5
commit bb1f37f0f5
parent 280484499b
3 changed files with 126 additions and 1 deletions
--- a/sci-biology/afni/Manifest
+++ b/sci-biology/afni/Manifest
@ -1,3 +1,5 @@
 DIST 5eae81ba1e87ef3553df3b6ba585f12dc81a0030.tar.gz 107702 BLAKE2B fba90e459c586abe46dd9a921420650e518d622464395e29e78d427bb1cd498156a0f8430bb5096c3648fe506e2dbc47ef66c7cf4a5faa599b296a29d07e74ef SHA512 c87712c0f334e025d29d1372ddbd7299b8d5378f7ef7dc09941a10f2f9c75ad9350fe8ceb6e0f6197a5f1c27ab79e03fdfb28a97582e860c6e667b29e9b75459
 DIST 65f801b9c2f1f15f4de4a19d45e6595c25765632.tar.gz 435886 BLAKE2B 3fdad348d7fa3c86f3d9edac060aed365d88bf43b3252156e2a548901d3f14436a6ba4dccfeb83e1452d51124ac42d854f86f3e25ca675ebbeb54fa331a5921b SHA512 be03cdc6cf17fd9ff74c5ecc1f6b2132121bb4b7973a731da334af2a8428d1f0dbbf7b94b2511d1ff7e515b8cc4cf3316d62b189566fb6ffc88c6146eebd48ff
 DIST 962155a01f5a1b87bd64e3e3d880b4dbc2347ac7.tar.gz 881944 BLAKE2B 48faf04e90ba0256f7773d0d1c1f35223d5a89fddc90eb363b25034015f0d75cabd58029947a9690a1071a5004a59fefc786b91626d5ecc5b1ca60d95097f2a6 SHA512 47c1888758020bcf881e7a4933eec1716118c671ac1a9bb4f4637a9634f7fd5c3b5bfa4da7fa001c2bc6abd0f2469583c1275c398836b5c77cb870507c8e7df2
+DIST d3e873d8539d9b469daf7db04093da1d7e73d4f7.tar.gz 107745 BLAKE2B b8162fe08446d5c934762e8dce051e93c8c90fd574dca55757988ccc45be20bfdd07b7a401ef6c536afbe097e6bc05fd3b7f09c4404af4fad4e21fbada7109de SHA512 c458074c6976245cffc48c1e1e57811ec3c0cc5959345bdbc8d674eed6c8a8f93e9f9762bf3acce7142e004dc37930d14bed8cfb97c5b7e92b3f39598da924e2
+DIST da476fd27f46098f37f5c9c4c1baee01e559572c.tar.gz 451578 BLAKE2B 6bb92ae3ab48dba435b067f7ec0b6d417658ee1a46efe05070bf18fd6d46b8339eaffd09c2fea4971d2685f211496a700b36c255ffb164994636e535b64fe4f5 SHA512 df92345ed580e8bf0579f2ea3ed55a4c4c678a0fe3bfad1e62379e5bf16961272bb2d3e7fda89b96b503cda51c1bf2fb8eb74adba6aad9c73b6830d7d884d1f5
--- a/sci-biology/afni/afni-23.3.13_p20231212.ebuild
+++ b/sci-biology/afni/afni-23.3.13_p20231212.ebuild
@ -0,0 +1,123 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+#CMAKE_MAKEFILE_GENERATOR="emake"
+PYTHON_COMPAT=( python3_{10..11} )
+
+inherit cmake distutils-r1 git-r3 multilib ninja-utils
+
+GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
+NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
+GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
+EGIT_COMMI="88c61486b22e3d4a68463f5f0d1030ed19b00bd2"
+
+DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
+HOMEPAGE="http://stnava.github.io/ANTs/"
+SRC_URI="
+	https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz
+	https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz
+	https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz
+	"
+EGIT_REPO_URI="https://github.com/afni/afni.git"
+
+SLOT="0"
+LICENSE="GPL-3+"
+KEYWORDS="~amd64"
+IUSE="test"
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	dev-libs/glib:2
+	dev-libs/libf2c
+	dev-libs/expat
+	dev-util/ninja
+	media-libs/freeglut
+	media-libs/glu
+	media-libs/netpbm
+	media-libs/qhull
+	media-video/mpeg-tools
+	sci-libs/gsl
+	sys-devel/llvm:*
+	sys-libs/libomp
+	dev-libs/libpthread-stubs
+	virtual/jpeg-compat:62
+	x11-libs/libGLw
+	x11-libs/libXft
+	x11-libs/libXi
+	x11-libs/libXmu
+	x11-libs/libXpm
+	x11-libs/libXt
+	x11-libs/motif[-static-libs]
+	"
+DEPEND="
+	${RDEPEND}
+	app-shells/tcsh
+	"
+# Prospectively:
+#sci-libs/gts
+#Update jpeg-compat to virtual/jpeg:0
+# look for xmhtlm
+
+src_prepare() {
+	tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
+	tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
+	tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
+	cmake_src_prepare
+	default
+	}
+
+src_configure() {
+	#LDFLAGS="-L${S}/${LIBDIR} ${LDFLAGS}" econf --enable-progpath="${EPREFIX}/usr/bin"
+	export CFLAGS="-pthread ${CFLAGS}"
+	export GIT_REPO_VERSION=3.0.1.1
+	#export LDFLAGS="-lpthread ${LDFLAGS}"
+	#-CC="$(tc-getCC)"
+	local mycmakeargs=(
+		-GNinja
+		-DLIBDIR=/usr/$(get_libdir)
+		-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
+		-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
+		-DCOMP_COREBINARIES=ON
+		-DUSE_SYSTEM_NIFTI=OFF
+		-DUSE_SYSTEM_GIFTI=OFF
+		-DUSE_SYSTEM_XMHTML=OFF
+		-DUSE_SYSTEM_GTS=OFF
+		-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}"
+		-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}"
+		-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}"
+		-DCOMP_GUI=ON
+		-DCOMP_PLUGINS=ON
+		-DUSE_OMP=ON
+		-DCOMP_PYTHON=OFF
+		-DPython_FIND_VIRTUALENV=STANDARD
+		-DPython_FIND_STRATEGY=LOCATION
+	)
+	tc-export CC
+	cmake_src_configure
+}
+
+src_compile() {
+	cd ../afni-9999_build
+	pwd
+	ls -la
+	eninja || die
+}
+
+#/work/afni-9999/nifti_clib-65f801b9c2f1f15f4de4a19d45e6595c25765632
+
+src_install() {
+	cd ../afni-9999_build
+	DESTDIR=${D} eninja install
+	#BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
+	#cmake_src_install
+	#cd "${S}/Scripts" || die "scripts dir not found"
+	#dobin *.sh
+	#dodir /usr/$(get_libdir)/ants
+	#insinto "/usr/$(get_libdir)/ants"
+	#doins *
+	#doenvd "${FILESDIR}"/99ants
+}
--- a/sci-biology/afni/afni-9999.ebuild
+++ b/sci-biology/afni/afni-9999.ebuild
@ -4,7 +4,7 @@
 EAPI=7

 #CMAKE_MAKEFILE_GENERATOR="emake"
-PYTHON_COMPAT=( python3_{8..10} )
+PYTHON_COMPAT=( python3_{10..11} )

 inherit cmake distutils-r1 git-r3 multilib ninja-utils