sci-libs/nipype: version bump 1.5.0

Package-Manager: Portage-2.3.103, Repoman-2.3.23
Signed-off-by: Horea Christian <chr@chymera.eu>

sci-libs/nipype/ChangeLog

@@ -1,3 +1,8 @@
+*nipype-1.5.0 (17 Jul 2020)
+
+  17 Jul 2020;  <chymera@gentoo.org> +nipype-1.5.0.ebuild:
+  sci-libs/nipype: version bump 1.5.0
+
   31 Mar 2020;  <chymera@gentoo.org> nipype-1.4.2.ebuild:
   sci-libs/nipype: fixed test suite
 

sci-libs/nipype/Manifest

@@ -1 +1,2 @@
 DIST nipype-1.4.2.tar.gz 2823870 SHA256 935b660bfd81f773bd5291a90a921cc226f62940950c094be04f080f6c69501d SHA512 f913d1a63105ccb8392adfdba5ec52b3e5ce0c9ad145b062f6e551a811602b77a52f1f6e89d9d5ff366e9b063f0ab965cfbd6ae5f68a79e25e8970e1a864901c WHIRLPOOL 21ab8554f8d5eec5fc7d5d9e137eef24f11443b805c892cb1a3dfbd5f34030a08c39300778337eb5499b011a2049c3c2724988d2210356d0d5525f4758b33fdf
+DIST nipype-1.5.0.tar.gz 2735317 SHA256 dbbe74ac99740da749350a6957326bd78d6ba388694b0c09cd92575f111576af SHA512 eb11096a090855278c3e76ffe9643ab4de046a017511ba51f59448fd8cf9d67a4f6c552acbbbdd38065cfb456c24fd21299cf698fa05c5be507524622f28ac85 WHIRLPOOL ffb44ddcf8d6e6a2d0e4179c89f15d59edc86b5188232e8b170a1352d51aa4b3806313d0a1c6215aced0d916252e27c2d8cc97d5ef94d12ac0418681fae0a40b

sci-libs/nipype/nipype-1.5.0.ebuild

@@ -0,0 +1,68 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/prov[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		${RDEPEND}
+		)
+"
+# Dependency disabled as upstream test configuration which requires it fails
+#dev-python/pytest-xdist[${PYTHON_USEDEP}]
+
+RDEPEND="
+	>=dev-python/click-6.6[${PYTHON_USEDEP}]
+	dev-python/filelock[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pydot[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	>=dev-python/rdflib-5.0.0[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+
+src_prepare() {
+	sed -i \
+		-e "/def test_no_et(tmp_path):/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \
+		nipype/tests/test_nipype.py || die
+	sed -i \
+		-e "/def test_fslversion():/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-605997462')" \
+		nipype/interfaces/fsl/tests/test_base.py || die
+	default
+}
+
+python_test() {
+	# Setting environment variable to disable etelemetry version check:
+	# https://github.com/nipy/nipype/issues/3196#issuecomment-605980044
+	NIPYPE_NO_ET=1 pytest -vv\
+		|| die
+	# Upstream test configuration fails
+		#-c nipype/pytest.ini\
+		#--doctest-modules nipype\
+		#--cov nipype\
+		#--cov-config .coveragerc\
+		#--cov-report xml:cov.xml\
+}