69 lines
2.0 KiB
Bash
69 lines
2.0 KiB
Bash
# Copyright 1999-2020 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python3_{6,7} )
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PYTHON_REQ_USE="threads(+),sqlite"
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inherit distutils-r1
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DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
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HOMEPAGE="http://nipy.sourceforge.net/nipype/"
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SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="test"
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DEPEND="
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/prov[${PYTHON_USEDEP}]
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sci-libs/nibabel[${PYTHON_USEDEP}]
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test? (
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dev-python/mock[${PYTHON_USEDEP}]
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dev-python/pytest[${PYTHON_USEDEP}]
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${RDEPEND}
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)
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"
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# Dependency disabled as upstream test configuration which requires it fails
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#dev-python/pytest-xdist[${PYTHON_USEDEP}]
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RDEPEND="
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>=dev-python/click-6.6[${PYTHON_USEDEP}]
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dev-python/filelock[${PYTHON_USEDEP}]
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dev-python/networkx[${PYTHON_USEDEP}]
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dev-python/packaging[${PYTHON_USEDEP}]
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dev-python/pydot[${PYTHON_USEDEP}]
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dev-python/pydotplus[${PYTHON_USEDEP}]
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dev-python/python-dateutil[${PYTHON_USEDEP}]
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>=dev-python/rdflib-5.0.0[${PYTHON_USEDEP}]
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dev-python/simplejson[${PYTHON_USEDEP}]
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dev-python/traits[${PYTHON_USEDEP}]
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sci-libs/scipy[${PYTHON_USEDEP}]
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"
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src_prepare() {
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sed -i \
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-e "/def test_no_et(tmp_path):/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-606003186')" \
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nipype/tests/test_nipype.py || die
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sed -i \
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-e "/def test_fslversion():/i@pytest.mark.skip('Known to fail by upstream: https://github.com/nipy/nipype/issues/3196#issuecomment-605997462')" \
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nipype/interfaces/fsl/tests/test_base.py || die
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default
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}
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python_test() {
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# Setting environment variable to disable etelemetry version check:
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# https://github.com/nipy/nipype/issues/3196#issuecomment-605980044
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NIPYPE_NO_ET=1 pytest -vv\
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|| die
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# Upstream test configuration fails
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#-c nipype/pytest.ini\
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#--doctest-modules nipype\
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#--cov nipype\
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#--cov-config .coveragerc\
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#--cov-report xml:cov.xml\
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}
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