dev-python/pynwb: version bump and test skip

linking skipped test reports on upstream issue treacker

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

dev-python/pynwb/ChangeLog

@@ -0,0 +1,6 @@
+*pynwb-2.0.0_p0 (31 Jan 2022)
+
+  31 Jan 2022;  <chymera@gentoo.org> +files/pynwb-2.0.0-versions.patch,
+  +pynwb-2.0.0_p0.ebuild, pynwb-2.0.0.ebuild:
+  dev-python/pynwb: version bump and test skip  linking skipped test reports on
+  upstream issue treacker

dev-python/pynwb/Manifest

@@ -1 +1,2 @@
+DIST pynwb-2.0.0.post0.dev5.tar.gz 450799 SHA256 28fdbca8611ee447f2bf30e78d7053626de6dfcf8368db4e01bea62db2f9566d SHA512 840a33cd0a2de5c491e785530e4dab589945015b9a60384ed127a27fbfe4c527b1b10d74a9ffe2a795a29c3bba65aafd007975973a2da68fca73bf71260b7b8b WHIRLPOOL 749958c8aadfdaa369239a8c1b25bb5dd2e27aee58a1cc477ea1b189543ab4178338c55781778ed70db596e97d9d355cbe87d3cba972355cf4762f609ff5194c
 DIST pynwb-2.0.0.tar.gz 450082 SHA256 c22c96dd255e69cee1835057d741613d52c2ea1c45b6a1ef7f87ebaa8a5055ad SHA512 4afc319fd9cce0c1e81589236237f9a28b69dd846d96849ae5cc554287a6dd124fd421f700736dbb714cfbe6f260e79f374d1dd63ee92c2776f5173654d61f9a WHIRLPOOL 0a14cb4e7369f52f40294265ea3af760161cbf14a81797f50b372f081f49e94d8a5d6d828e212eb9136b224afbee52ae6a8e299b52a7f10231d59c33c7225284

dev-python/pynwb/files/pynwb-2.0.0-versions.patch

@@ -0,0 +1,21 @@
+diff --git a/setup.py b/tmp/setup.py
+index 39e75824..f7948f64 100755
+--- a/setup.py
++++ b/setup.py
+@@ -19,11 +19,11 @@ print('found these packages:', pkgs)
+ schema_dir = 'nwb-schema/core'
+ 
+ reqs = [
+-    'h5py>=2.9,<4',
+-    'hdmf>=3.1.1,<4',
+-    'numpy>=1.16,<1.22',
+-    'pandas>=1.0.5,<2',
+-    'python-dateutil>=2.7,<3',
++    'h5py',
++    'hdmf',
++    'numpy',
++    'pandas',
++    'python-dateutil',
+     'setuptools'
+ ]
+ 

dev-python/pynwb/pynwb-2.0.0.ebuild

@@ -1,4 +1,4 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
@@ -24,5 +24,23 @@ RDEPEND="
 	"
 BDEPEND=""
 
-distutils_enable_tests setup.py
+PATCHES=(
-# 2 tests fail, ongoing: https://bugs.gentoo.org/814530
+	"${FILESDIR}/${P}-versions.patch"
+	)
+
+EPYTEST_DESELECT=(
+	# Reported upsream:
+	# https://github.com/dandi/dandischema/issues/87
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
+	# Reported upstream and fixed in newer version:
+	# https://github.com/NeurodataWithoutBorders/pynwb/issues/1412#issuecomment-934153799
+	tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_dandi_read
+	tests/integration/ros3/test_ros3.py::TestRos3Streaming::test_read
+)
+
+distutils_enable_tests pytest

dev-python/pynwb/pynwb-2.0.0_p0.ebuild

@@ -0,0 +1,47 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{8..10} )
+inherit distutils-r1
+
+MY_PV="$(ver_cut 1-3).post$(ver_cut 5).dev5"
+MY_P="${PN}-${MY_PV}"
+
+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format "
+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb"
+SRC_URI="https://github.com/NeurodataWithoutBorders/pynwb/releases/download/latest/${MY_P}.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86"
+
+RDEPEND="
+	sci-libs/hdf5[ros3]
+	dev-python/hdmf[${PYTHON_USEDEP}]
+	dev-python/h5py[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	"
+BDEPEND=""
+
+PATCHES=(
+	"${FILESDIR}/${PN}-2.0.0-versions.patch"
+	)
+
+S="${WORKDIR}/${MY_P}"
+
+EPYTEST_DESELECT=(
+	# Reported upsream
+	# https://github.com/dandi/dandischema/issues/87
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_bad_ns
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_hdmf_common
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_cached_ignore
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache
+	tests/validation/test_validate.py::TestValidateScript::test_validate_file_no_cache_bad_ns
+)
+
+distutils_enable_tests pytest