Ebuild drafts

sci-libs/nipype/.nipype-1.1.7.ebuild

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+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	dev-python/future[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pytest-cov[${PYTHON_USEDEP}]
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+		${RDEPEND}
+		)
+	$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+	"
+RDEPEND="
+	>=dev-python/click-6.6[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pydot[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/pygraphviz[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	virtual/python-funcsigs[${PYTHON_USEDEP}]
+	"
+
+python_test() {
+	py.test -v --cov nipype\
+		--cov-config .coveragerc\
+		--cov-report xml:cov.xml\
+		-c nipype/pytest.ini\
+		--doctest-modules nipype\
+		|| die
+}

sci-libs/nipype/.nipype-1.1.9.ebuild

@@ -0,0 +1,57 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	dev-python/future[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+		${RDEPEND}
+		)
+	$(python_gen_cond_dep '
+		dev-python/futures[${PYTHON_USEDEP}]
+		dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+	"
+RDEPEND="
+	>=dev-python/click-6.6[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pydot[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/pygraphviz[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	virtual/python-funcsigs[${PYTHON_USEDEP}]
+	"
+
+python_test() {
+	py.test -v --cov nipype\
+		--cov-config .coveragerc\
+		--cov-report xml:cov.xml\
+		-c nipype/pytest.ini\
+		--doctest-modules nipype\
+		|| die
+}

sci-libs/nipype/metadata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>horea.christ@gmail.com</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+Nipype, an open-source, community-developed initiative under the
+umbrella of NiPy, is a Python project that provides a uniform interface
+to existing neuroimaging software and facilitates interaction between
+these packages within a single workflow. Nipype provides an environment
+that encourages interactive exploration of algorithms from different
+packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
+eases the design of workflows within and between packages, and reduces
+the learning curve necessary to use different packages. Nipype is
+creating a collaborative platform for neuroimaging software development
+in a high-level language and addressing limitations of existing pipeline systems.
+</longdescription>
+	<upstream>
+		<remote-id type="github">nipy/nipype</remote-id>
+		<remote-id type="sourceforge">nipy</remote-id>
+	</upstream>
+</pkgmetadata>