diff --git a/sci-libs/nipype/.nipype-1.1.7.ebuild b/sci-libs/nipype/.nipype-1.1.7.ebuild new file mode 100644 index 0000000..b1e7b91 --- /dev/null +++ b/sci-libs/nipype/.nipype-1.1.7.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/" +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-cov[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + ${RDEPEND} + ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/python-funcsigs[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v --cov nipype\ + --cov-config .coveragerc\ + --cov-report xml:cov.xml\ + -c nipype/pytest.ini\ + --doctest-modules nipype\ + || die +} diff --git a/sci-libs/nipype/.nipype-1.1.9.ebuild b/sci-libs/nipype/.nipype-1.1.9.ebuild new file mode 100644 index 0000000..70a0c37 --- /dev/null +++ b/sci-libs/nipype/.nipype-1.1.9.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/" +SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + ~dev-python/prov-1.5.0[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-xdist[${PYTHON_USEDEP}] + ${RDEPEND} + ) + $(python_gen_cond_dep ' + dev-python/futures[${PYTHON_USEDEP}] + dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + >=dev-python/click-6.6[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/packaging[${PYTHON_USEDEP}] + dev-python/pydot[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/python-dateutil[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + virtual/python-funcsigs[${PYTHON_USEDEP}] + " + +python_test() { + py.test -v --cov nipype\ + --cov-config .coveragerc\ + --cov-report xml:cov.xml\ + -c nipype/pytest.ini\ + --doctest-modules nipype\ + || die +} diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml new file mode 100644 index 0000000..fddca4c --- /dev/null +++ b/sci-libs/nipype/metadata.xml @@ -0,0 +1,28 @@ + + + + + horea.christ@gmail.com + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + +Nipype, an open-source, community-developed initiative under the +umbrella of NiPy, is a Python project that provides a uniform interface +to existing neuroimaging software and facilitates interaction between +these packages within a single workflow. Nipype provides an environment +that encourages interactive exploration of algorithms from different +packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer), +eases the design of workflows within and between packages, and reduces +the learning curve necessary to use different packages. Nipype is +creating a collaborative platform for neuroimaging software development +in a high-level language and addressing limitations of existing pipeline systems. + + + nipy/nipype + nipy + +