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Horea Christian
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sci-libs/nipype/.nipype-1.1.7.ebuild
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56
sci-libs/nipype/.nipype-1.1.7.ebuild
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# Copyright 1999-2018 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
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PYTHON_REQ_USE="threads(+),sqlite"
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inherit distutils-r1
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DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
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HOMEPAGE="http://nipy.sourceforge.net/nipype/"
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SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="test"
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DEPEND="
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dev-python/future[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
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dev-python/setuptools[${PYTHON_USEDEP}]
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sci-libs/nibabel[${PYTHON_USEDEP}]
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test? (
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dev-python/mock[${PYTHON_USEDEP}]
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dev-python/pytest[${PYTHON_USEDEP}]
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dev-python/pytest-cov[${PYTHON_USEDEP}]
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dev-python/pytest-xdist[${PYTHON_USEDEP}]
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${RDEPEND}
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)
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$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
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"
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RDEPEND="
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>=dev-python/click-6.6[${PYTHON_USEDEP}]
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dev-python/networkx[${PYTHON_USEDEP}]
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dev-python/packaging[${PYTHON_USEDEP}]
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dev-python/pydot[${PYTHON_USEDEP}]
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dev-python/pydotplus[${PYTHON_USEDEP}]
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dev-python/pygraphviz[${PYTHON_USEDEP}]
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dev-python/python-dateutil[${PYTHON_USEDEP}]
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dev-python/simplejson[${PYTHON_USEDEP}]
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dev-python/traits[${PYTHON_USEDEP}]
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sci-libs/scipy[${PYTHON_USEDEP}]
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virtual/python-funcsigs[${PYTHON_USEDEP}]
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"
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python_test() {
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py.test -v --cov nipype\
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--cov-config .coveragerc\
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--cov-report xml:cov.xml\
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-c nipype/pytest.ini\
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--doctest-modules nipype\
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|| die
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}
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57
sci-libs/nipype/.nipype-1.1.9.ebuild
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sci-libs/nipype/.nipype-1.1.9.ebuild
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# Copyright 1999-2019 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
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PYTHON_REQ_USE="threads(+),sqlite"
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inherit distutils-r1
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DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
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HOMEPAGE="http://nipy.sourceforge.net/nipype/"
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SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="test"
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DEPEND="
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dev-python/future[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
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dev-python/setuptools[${PYTHON_USEDEP}]
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sci-libs/nibabel[${PYTHON_USEDEP}]
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test? (
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dev-python/mock[${PYTHON_USEDEP}]
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dev-python/pytest[${PYTHON_USEDEP}]
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dev-python/pytest-xdist[${PYTHON_USEDEP}]
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${RDEPEND}
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)
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$(python_gen_cond_dep '
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dev-python/futures[${PYTHON_USEDEP}]
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dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
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"
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RDEPEND="
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>=dev-python/click-6.6[${PYTHON_USEDEP}]
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dev-python/networkx[${PYTHON_USEDEP}]
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dev-python/packaging[${PYTHON_USEDEP}]
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dev-python/pydot[${PYTHON_USEDEP}]
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dev-python/pydotplus[${PYTHON_USEDEP}]
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dev-python/pygraphviz[${PYTHON_USEDEP}]
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dev-python/python-dateutil[${PYTHON_USEDEP}]
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dev-python/simplejson[${PYTHON_USEDEP}]
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dev-python/traits[${PYTHON_USEDEP}]
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sci-libs/scipy[${PYTHON_USEDEP}]
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virtual/python-funcsigs[${PYTHON_USEDEP}]
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"
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python_test() {
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py.test -v --cov nipype\
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--cov-config .coveragerc\
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--cov-report xml:cov.xml\
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-c nipype/pytest.ini\
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--doctest-modules nipype\
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|| die
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}
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28
sci-libs/nipype/metadata.xml
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sci-libs/nipype/metadata.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>horea.christ@gmail.com</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<longdescription lang="en">
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Nipype, an open-source, community-developed initiative under the
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umbrella of NiPy, is a Python project that provides a uniform interface
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to existing neuroimaging software and facilitates interaction between
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these packages within a single workflow. Nipype provides an environment
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that encourages interactive exploration of algorithms from different
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packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
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eases the design of workflows within and between packages, and reduces
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the learning curve necessary to use different packages. Nipype is
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creating a collaborative platform for neuroimaging software development
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in a high-level language and addressing limitations of existing pipeline systems.
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</longdescription>
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<upstream>
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<remote-id type="github">nipy/nipype</remote-id>
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<remote-id type="sourceforge">nipy</remote-id>
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</upstream>
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</pkgmetadata>
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