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sci-biology/samri: migrated version to Gentoo Science

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https://gitweb.gentoo.org/proj/sci.git/commit/?id=e68c1eb1aea94ee2860d3b9feb079932114904ea

Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Horea Christian <chr@chymera.eu>
This commit is contained in:
Horea Christian 2019-12-08 15:56:13 +01:00
parent 16a7aa9502
commit 39b0c70775
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3 changed files with 4 additions and 58 deletions
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sci-biology/samri/ChangeLog
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08 Dec 2019; <chymera@gentoo.org> -Manifest, -samri-0.4.1.ebuild:
sci-biology/samri: migrated version to Gentoo Science https://gitweb.gentoo.o
rg/proj/sci.git/commit/?id=e68c1eb1aea94ee2860d3b9feb079932114904ea
*samri-0.4.1 (08 Dec 2019)
08 Dec 2019; <chymera@gentoo.org> +samri-0.4.1.ebuild, -samri-0.4.ebuild:

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sci-biology/samri/Manifest
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DIST samri-0.4.1.tar.gz 4115417 SHA256 aacf7f02d7d7adb46b31aeb85bf85abbe3c28d9f4aa92d2149114fb0416fdd04 SHA512 c2eef33e725d0d5b87f30ce8da51d9c46ce735a8d82e41f93eba8d225b58eead4777441db4be9078e7f29b3f92d12525d729dddea888fd7e9a66ba5e607d8caf WHIRLPOOL 6ca655dd4b28dc1f194bf40fc830645c179cad67d3f85deffd6251a0cc9054e936372566caae1daa608025eec6fc0e892fc8e1d2b62c3491ea71c1581d21a1e9

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sci-biology/samri/samri-0.4.1.ebuild
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# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_6 )
inherit distutils-r1
DESCRIPTION="Small Animal Magnetic Resonance Imaging"
HOMEPAGE="https://github.com/IBT-FMI/SAMRI"
SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE="labbookdb test"
KEYWORDS="~amd64"
DEPEND="
test? (
dev-python/pytest[${PYTHON_USEDEP}]
sci-biology/samri_bidsdata
sci-biology/samri_bindata
)
"
RDEPEND="
dev-python/argh[${PYTHON_USEDEP}]
dev-python/joblib[${PYTHON_USEDEP}]
>=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}]
>=dev-python/numpy-1.13.3[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/seaborn[${PYTHON_USEDEP}]
dev-python/statsmodels[${PYTHON_USEDEP}]
media-gfx/blender
>=sci-biology/fsl-5.0.9
sci-biology/bru2nii
sci-biology/mouse-brain-atlases
labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] )
sci-libs/nibabel[${PYTHON_USEDEP}]
>=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}]
>=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}]
<=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}]
sci-libs/scikits_image[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
sci-biology/ants
sci-biology/afni
sci-biology/nilearn[${PYTHON_USEDEP}]
"
S="${WORKDIR}/SAMRI-${PV}"
src_prepare() {
distutils-r1_src_prepare
sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri`
sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh`
eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh)
}