From 39b0c7077592d1aecbe662cb7ef715e286ecebf5 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Sun, 8 Dec 2019 15:56:13 +0100 Subject: [PATCH] sci-biology/samri: migrated version to Gentoo Science https://gitweb.gentoo.org/proj/sci.git/commit/?id=e68c1eb1aea94ee2860d3b9feb079932114904ea Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Horea Christian --- sci-biology/samri/ChangeLog | 4 ++ sci-biology/samri/Manifest | 1 - sci-biology/samri/samri-0.4.1.ebuild | 57 ---------------------------- 3 files changed, 4 insertions(+), 58 deletions(-) delete mode 100644 sci-biology/samri/Manifest delete mode 100644 sci-biology/samri/samri-0.4.1.ebuild diff --git a/sci-biology/samri/ChangeLog b/sci-biology/samri/ChangeLog index 7802d8f..f318c6b 100644 --- a/sci-biology/samri/ChangeLog +++ b/sci-biology/samri/ChangeLog @@ -1,3 +1,7 @@ + 08 Dec 2019; -Manifest, -samri-0.4.1.ebuild: + sci-biology/samri: migrated version to Gentoo Science https://gitweb.gentoo.o + rg/proj/sci.git/commit/?id=e68c1eb1aea94ee2860d3b9feb079932114904ea + *samri-0.4.1 (08 Dec 2019) 08 Dec 2019; +samri-0.4.1.ebuild, -samri-0.4.ebuild: diff --git a/sci-biology/samri/Manifest b/sci-biology/samri/Manifest deleted file mode 100644 index 1c1d72c..0000000 --- a/sci-biology/samri/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST samri-0.4.1.tar.gz 4115417 SHA256 aacf7f02d7d7adb46b31aeb85bf85abbe3c28d9f4aa92d2149114fb0416fdd04 SHA512 c2eef33e725d0d5b87f30ce8da51d9c46ce735a8d82e41f93eba8d225b58eead4777441db4be9078e7f29b3f92d12525d729dddea888fd7e9a66ba5e607d8caf WHIRLPOOL 6ca655dd4b28dc1f194bf40fc830645c179cad67d3f85deffd6251a0cc9054e936372566caae1daa608025eec6fc0e892fc8e1d2b62c3491ea71c1581d21a1e9 diff --git a/sci-biology/samri/samri-0.4.1.ebuild b/sci-biology/samri/samri-0.4.1.ebuild deleted file mode 100644 index 547b8e9..0000000 --- a/sci-biology/samri/samri-0.4.1.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_6 ) - -inherit distutils-r1 - -DESCRIPTION="Small Animal Magnetic Resonance Imaging" -HOMEPAGE="https://github.com/IBT-FMI/SAMRI" -SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -IUSE="labbookdb test" -KEYWORDS="~amd64" - -DEPEND=" - test? ( - dev-python/pytest[${PYTHON_USEDEP}] - sci-biology/samri_bidsdata - sci-biology/samri_bindata - ) -" -RDEPEND=" - dev-python/argh[${PYTHON_USEDEP}] - dev-python/joblib[${PYTHON_USEDEP}] - >=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}] - >=dev-python/numpy-1.13.3[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/seaborn[${PYTHON_USEDEP}] - dev-python/statsmodels[${PYTHON_USEDEP}] - media-gfx/blender - >=sci-biology/fsl-5.0.9 - sci-biology/bru2nii - sci-biology/mouse-brain-atlases - labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) - sci-libs/nibabel[${PYTHON_USEDEP}] - >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] - >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}] - <=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}] - sci-libs/scikits_image[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - sci-biology/ants - sci-biology/afni - sci-biology/nilearn[${PYTHON_USEDEP}] -" - -S="${WORKDIR}/SAMRI-${PV}" - -src_prepare() { - distutils-r1_src_prepare - sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` - sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` - eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) -}