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sci-biology/samri: prefix support and labbookdb USE flag

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Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Horea Christian <chr@chymera.eu>
This commit is contained in:
Horea Christian 2019-11-12 20:37:57 +01:00
parent 420229ec30
commit 233eb6a867
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GPG Key ID: EAA9223EE3BB378A
3 changed files with 30 additions and 12 deletions
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2
sci-biology/samri/ChangeLog Normal file
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@ -0,0 +1,2 @@
12 Nov 2019; <chymera@gentoo.org> metadata.xml, samri-0.4.ebuild:
sci-biology/samri:

30
sci-biology/samri/metadata.xml
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@ -1,14 +1,22 @@
<?xml version="1.0" encoding="UTF-8"?>
<?xml version='1.0' encoding='UTF-8'?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>chr@chymera.eu</email>
<name>Horea Christian</name>
</maintainer>
<longdescription lang="en">
SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides fMRI preprocessing, metadata parsing, and data analysis functions and workflows. SAMRI integrates functionalities from a number of other packages (listed under the dependencies section below) to create higher-level tools. The resulting interfaces aim to maximize reproducibility, simplify batch processing, and minimize the number of function calls required to generate figures and statistical summaries from the raw data.
</longdescription>
<upstream>
<remote-id type="github">IBT-FMI/SAMRI</remote-id>
</upstream>
<maintainer type="person">
<email>chr@chymera.eu</email>
<name>Horea Christian</name>
</maintainer>
<longdescription lang="en">
SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides
fMRI preprocessing, metadata parsing, and data analysis functions and workflows.
SAMRI integrates functionalities from a number of other packages to create
higher-level tools. The resulting interfaces aim to maximize reproducibility,
simplify batch processing, and minimize the number of function calls required to
generate figures and statistical summaries from the raw data.
</longdescription>
<use>
<flag name="labbookdb">Pipe data from LabbookDB databases.</flag>
</use>
<upstream>
<remote-id type="github">IBT-FMI/SAMRI</remote-id>
</upstream>
</pkgmetadata>

10
sci-biology/samri/samri-0.4.ebuild
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@ -13,7 +13,7 @@ SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
IUSE="test"
IUSE="labbookdb test"
KEYWORDS="~amd64 ~x86"
DEPEND="
@ -35,6 +35,7 @@ RDEPEND="
>=sci-biology/fsl-5.0.9
sci-biology/bru2nii
sci-biology/mouse-brain-atlases
labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] )
sci-libs/nibabel[${PYTHON_USEDEP}]
>=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}]
>=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}]
@ -47,3 +48,10 @@ RDEPEND="
"
S="${WORKDIR}/SAMRI-${PV}"
src_prepare() {
distutils-r1_src_prepare
sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri`
sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh`
eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh)
}