diff --git a/sci-biology/samri/ChangeLog b/sci-biology/samri/ChangeLog new file mode 100644 index 0000000..2bd93f1 --- /dev/null +++ b/sci-biology/samri/ChangeLog @@ -0,0 +1,2 @@ + 12 Nov 2019; metadata.xml, samri-0.4.ebuild: + sci-biology/samri: diff --git a/sci-biology/samri/metadata.xml b/sci-biology/samri/metadata.xml index 4e5d69e..4203e6f 100644 --- a/sci-biology/samri/metadata.xml +++ b/sci-biology/samri/metadata.xml @@ -1,14 +1,22 @@ - + - - chr@chymera.eu - Horea Christian - - - SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides fMRI preprocessing, metadata parsing, and data analysis functions and workflows. SAMRI integrates functionalities from a number of other packages (listed under the dependencies section below) to create higher-level tools. The resulting interfaces aim to maximize reproducibility, simplify batch processing, and minimize the number of function calls required to generate figures and statistical summaries from the raw data. - - - IBT-FMI/SAMRI - + + chr@chymera.eu + Horea Christian + + + SAMRI (Small Animal Magnetic Resonance Imaging) — pronounced "Sam-rye" — provides + fMRI preprocessing, metadata parsing, and data analysis functions and workflows. + SAMRI integrates functionalities from a number of other packages to create + higher-level tools. The resulting interfaces aim to maximize reproducibility, + simplify batch processing, and minimize the number of function calls required to + generate figures and statistical summaries from the raw data. + + + Pipe data from LabbookDB databases. + + + IBT-FMI/SAMRI + diff --git a/sci-biology/samri/samri-0.4.ebuild b/sci-biology/samri/samri-0.4.ebuild index 0156c8d..bfd4390 100644 --- a/sci-biology/samri/samri-0.4.ebuild +++ b/sci-biology/samri/samri-0.4.ebuild @@ -13,7 +13,7 @@ SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz" LICENSE="GPL-3" SLOT="0" -IUSE="test" +IUSE="labbookdb test" KEYWORDS="~amd64 ~x86" DEPEND=" @@ -35,6 +35,7 @@ RDEPEND=" >=sci-biology/fsl-5.0.9 sci-biology/bru2nii sci-biology/mouse-brain-atlases + labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] ) sci-libs/nibabel[${PYTHON_USEDEP}] >=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}] >=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}] @@ -47,3 +48,10 @@ RDEPEND=" " S="${WORKDIR}/SAMRI-${PV}" + +src_prepare() { + distutils-r1_src_prepare + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ samri` + sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ test_scripts.sh` + eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh) +}