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dev-python/tridesclous: updated tests and dependencies

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Signed-off-by: Horea Christian <chr@chymera.eu>
This commit is contained in:
Horea Christian 2023-01-30 19:56:57 -05:00
parent aecb747a50
commit 1fc0a4069d
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2 changed files with 58 additions and 20 deletions
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4
dev-python/tridesclous/Manifest
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@ -1,2 +1,2 @@
DIST tridesclous-1.6.4.tar.gz 11798060 BLAKE2B 05603bc789ea53eed8bf5a40674975b754c9375cd1b80a470c07089c988b9c3d8822747a0c73d3c4a375c6663190d15492e4e59c0fdeaac48beee66ee2b4fabf SHA512 afb50bbbe51fa57fbe7479576c8bebefbd56d8bc135ec38362cdf8b9e51cb4da990d7262e653a9636b1a7b8e45d4f9c4700a37884a235958978b75b968be2a19
DIST tridesclous-1.6.6.tar.gz 11798502 BLAKE2B af9eb4d4e899f2a065d37e6daaae9ad04209b3d10c250957985ef3603e5d5727947dafff75adf5bb892a4ccbbf2f575f682bd601afcf36bda48f5f7a2af6ab26 SHA512 b101a8a8c2e95b7eb51b7d24d2708a30421be63d48d5a7047dfa2be3ce0f15ce02ce518d5516d5fae3d040cb0d2037a49afd34fdbd03bc641dc42014d8861d0d
DIST tridesclous-1.6.4.tar.gz 11796133 BLAKE2B a720cf574f4eea2ee0750e6b752aeb8ebc35eea978e5c1d5eabbe6f8e6a6e3cd287ec9005767f6466b648f349c3838e211dd377b4f8ca4034d48009ff97ca102 SHA512 13740c26f3f99ecd3eb3b4888e5bc03a2686458128d1f29c53ac8b771ffe8d9e110a5f55b2937279caf2bb9ab053ff30b56c8a0480539a7335cd2a215a42c5bc
DIST tridesclous-1.6.6.tar.gz 11796524 BLAKE2B 1dfacb6824e2cc7e209ad43e14964f0aa885580944e38f160df2b38896f2573209728de3128c1d60b2ace1d1b72929937d6fb48e1670b8659b18d7fbdbbbd665 SHA512 71691eef6da07d7847054b11fbd7dc283e71f03d2e75645d30890900225060efdcabf671168311aa967d5fc2cb79285c69e2052cdf744085dc9e0fac0318fa30

74
dev-python/tridesclous/tridesclous-1.6.4.ebuild
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@ -14,29 +14,25 @@ LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
IUSE="gui test"
RESTRICT="test"
# Tests fail, reported upstream
# https://github.com/tridesclous/tridesclous/issues/175
RDEPEND="
<dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
dev-python/cython[${PYTHON_USEDEP}]
dev-python/hdbscan[${PYTHON_USEDEP}]
dev-python/loky[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/neo[${PYTHON_USEDEP}]
dev-python/numba
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/openpyxl[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/seaborn[${PYTHON_USEDEP}]
dev-python/tqdm[${PYTHON_USEDEP}]
sci-libs/scikit-learn[${PYTHON_USEDEP}]
gui? (
dev-python/PyQt5[${PYTHON_USEDEP}]
)
"
# Technically also seaborn:
# dev-python/seaborn[${PYTHON_USEDEP}]
DEPEND="
test? (
${RDEPEND}
@ -45,22 +41,64 @@ DEPEND="
distutils_enable_tests pytest
# Network sandboxing, this is sadly more than half the test suite :(
EPYTEST_DESELECT=(
tridesclous/tests/test_cleancluster.py::test_auto_split
tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
tridesclous/tests/test_cleancluster.py::test_auto_merge
tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
tridesclous/tests/test_cluster.py::test_sawchaincut
tridesclous/tests/test_cluster.py::test_pruningshears
tridesclous/tests/test_decomposition.py::test_all_decomposition
tridesclous/tests/test_export.py::test_export
tridesclous/tests/test_export.py::test_export_catalogue_spikes
tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
tridesclous/tests/test_matplotlibplot.py::test_plot_signals
tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
tridesclous/tests/test_metrics.py::test_all_metrics
tridesclous/tests/test_metrics.py::test_cluster_ratio
tridesclous/tests/test_peeler.py::test_peeler_geometry
tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
tridesclous/tests/test_peeler.py::test_export_spikes
tridesclous/tests/test_report.py::test_summary_catalogue_clusters
tridesclous/tests/test_report.py::test_summary_noise
tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
tridesclous/tests/test_report.py::test_generate_report
tridesclous/tests/test_autoparams.py::test_get_auto_params
tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
tridesclous/tests/test_dataio.py::test_DataIO
tridesclous/tests/test_dataio.py::test_DataIO_probes
tridesclous/tests/test_datasets.py::test_download_dataset
tridesclous/tests/test_datasets.py::test_get_dataset
tridesclous/tests/test_datasource.py::test_RawDataSource
tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
tridesclous/tests/test_tools.py::test_fix_prb_file_py2
)
python_test() {
local EPYTEST_IGNORE=(
tridesclous/online/tests/test_launcher.py
tridesclous/online/tests/test_onlinepeeler.py
tridesclous/online/tests/test_onlinewindow.py
tridesclous/online/tests/*
)
if use !gui ; then
EPYTEST_IGNORE+=(
tridesclous/gui/test_gpuselector.py
tridesclous/gui/icons/test_ressources.py
tridesclous/gui/tests/test_cataloguewindow.py
tridesclous/gui/tests/test_gui_tools.py
tridesclous/gui/tests/test_initializedatasetwindow.py
tridesclous/gui/tests/test_mainwindow.py
tridesclous/gui/tests/test_peelerwindow.py
tridesclous/gui/tests/test_probegeometryview.py
local EPYTEST_IGNORE+=(
tridesclous/gui/*
)
fi
epytest