Enhance CSV document parsing

2024-11-26 14:54:27 +01:00 · 2021-09-28 15:58:36 +02:00 · 2021-09-28 15:58:36 +02:00 · d2427f18e5
commit d2427f18e5
parent b2a332599e
3 changed files with 364 additions and 4 deletions
--- a/benchmarks/benches/utils.rs
+++ b/benchmarks/benches/utils.rs
@ -2,6 +2,7 @@

 use std::fs::{create_dir_all, remove_dir_all, File};
 use std::io::{self, Cursor, Read, Seek};
+use std::num::ParseFloatError;
 use std::path::Path;

 use criterion::BenchmarkId;
@ -175,8 +176,7 @@ fn documents_from_csv(reader: impl io::Read) -> anyhow::Result<Vec<u8>> {
    let mut writer = Cursor::new(Vec::new());
    let mut documents = milli::documents::DocumentBatchBuilder::new(&mut writer)?;

-    let mut records = csv::Reader::from_reader(reader);
-    let iter = records.deserialize::<Map<String, Value>>();
+    let iter = CSVDocumentDeserializer::from_reader(reader)?;

    for doc in iter {
        let doc = doc?;
@ -187,3 +187,77 @@ fn documents_from_csv(reader: impl io::Read) -> anyhow::Result<Vec<u8>> {

    Ok(writer.into_inner())
 }
+
+enum AllowedType {
+    String,
+    Number,
+}
+
+fn parse_csv_header(header: &str) -> (String, AllowedType) {
+    // if there are several separators we only split on the last one.
+    match header.rsplit_once(':') {
+        Some((field_name, field_type)) => match field_type {
+            "string" => (field_name.to_string(), AllowedType::String),
+            "number" => (field_name.to_string(), AllowedType::Number),
+            // we may return an error in this case.
+            _otherwise => (header.to_string(), AllowedType::String),
+        },
+        None => (header.to_string(), AllowedType::String),
+    }
+}
+
+struct CSVDocumentDeserializer<R>
+where
+    R: Read,
+{
+    documents: csv::StringRecordsIntoIter<R>,
+    headers: Vec<(String, AllowedType)>,
+}
+
+impl<R: Read> CSVDocumentDeserializer<R> {
+    fn from_reader(reader: R) -> io::Result<Self> {
+        let mut records = csv::Reader::from_reader(reader);
+
+        let headers = records.headers()?.into_iter().map(parse_csv_header).collect();
+
+        Ok(Self { documents: records.into_records(), headers })
+    }
+}
+
+impl<R: Read> Iterator for CSVDocumentDeserializer<R> {
+    type Item = anyhow::Result<Map<String, Value>>;
+
+    fn next(&mut self) -> Option<Self::Item> {
+        let csv_document = self.documents.next()?;
+
+        match csv_document {
+            Ok(csv_document) => {
+                let mut document = Map::new();
+
+                for ((field_name, field_type), value) in
+                    self.headers.iter().zip(csv_document.into_iter())
+                {
+                    let parsed_value: Result<Value, ParseFloatError> = match field_type {
+                        AllowedType::Number => {
+                            value.parse::<f64>().map(Value::from).map_err(Into::into)
+                        }
+                        AllowedType::String => Ok(Value::String(value.to_string())),
+                    };
+
+                    match parsed_value {
+                        Ok(value) => drop(document.insert(field_name.to_string(), value)),
+                        Err(_e) => {
+                            return Some(Err(anyhow::anyhow!(
+                                "Value '{}' is not a valid number",
+                                value
+                            )))
+                        }
+                    }
+                }
+
+                Some(Ok(document))
+            }
+            Err(e) => Some(Err(anyhow::anyhow!("Error parsing csv document: {}", e))),
+        }
+    }
+}
--- a/http-ui/src/documents_from_csv.rs
+++ b/http-ui/src/documents_from_csv.rs
@ -0,0 +1,285 @@
+use std::io::{Read, Result as IoResult};
+use std::num::ParseFloatError;
+
+use serde_json::{Map, Value};
+
+enum AllowedType {
+    String,
+    Number,
+}
+
+fn parse_csv_header(header: &str) -> (String, AllowedType) {
+    // if there are several separators we only split on the last one.
+    match header.rsplit_once(':') {
+        Some((field_name, field_type)) => match field_type {
+            "string" => (field_name.to_string(), AllowedType::String),
+            "number" => (field_name.to_string(), AllowedType::Number),
+            // we may return an error in this case.
+            _otherwise => (header.to_string(), AllowedType::String),
+        },
+        None => (header.to_string(), AllowedType::String),
+    }
+}
+
+pub struct CSVDocumentDeserializer<R>
+where
+    R: Read,
+{
+    documents: csv::StringRecordsIntoIter<R>,
+    headers: Vec<(String, AllowedType)>,
+}
+
+impl<R: Read> CSVDocumentDeserializer<R> {
+    pub fn from_reader(reader: R) -> IoResult<Self> {
+        let mut records = csv::Reader::from_reader(reader);
+
+        let headers = records.headers()?.into_iter().map(parse_csv_header).collect();
+
+        Ok(Self { documents: records.into_records(), headers })
+    }
+}
+
+impl<R: Read> Iterator for CSVDocumentDeserializer<R> {
+    type Item = anyhow::Result<Map<String, Value>>;
+
+    fn next(&mut self) -> Option<Self::Item> {
+        let csv_document = self.documents.next()?;
+
+        match csv_document {
+            Ok(csv_document) => {
+                let mut document = Map::new();
+
+                for ((field_name, field_type), value) in
+                    self.headers.iter().zip(csv_document.into_iter())
+                {
+                    let parsed_value: Result<Value, ParseFloatError> = match field_type {
+                        AllowedType::Number => {
+                            value.parse::<f64>().map(Value::from).map_err(Into::into)
+                        }
+                        AllowedType::String => Ok(Value::String(value.to_string())),
+                    };
+
+                    match parsed_value {
+                        Ok(value) => drop(document.insert(field_name.to_string(), value)),
+                        Err(_e) => {
+                            return Some(Err(anyhow::anyhow!(
+                                "Value '{}' is not a valid number",
+                                value
+                            )))
+                        }
+                    }
+                }
+
+                Some(Ok(document))
+            }
+            Err(e) => Some(Err(anyhow::anyhow!("Error parsing csv document: {}", e))),
+        }
+    }
+}
+
+#[cfg(test)]
+mod test {
+    use serde_json::json;
+
+    use super::*;
+
+    #[test]
+    fn simple_csv_document() {
+        let documents = r#"city,country,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city": "Boston",
+                "country": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn coma_in_field() {
+        let documents = r#"city,country,pop
+"Boston","United, States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city": "Boston",
+                "country": "United, States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn quote_in_field() {
+        let documents = r#"city,country,pop
+"Boston","United"" States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city": "Boston",
+                "country": "United\" States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn integer_in_field() {
+        let documents = r#"city,country,pop:number
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city": "Boston",
+                "country": "United States",
+                "pop": 4628910.0,
+            })
+        );
+    }
+
+    #[test]
+    fn float_in_field() {
+        let documents = r#"city,country,pop:number
+"Boston","United States","4628910.01""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city": "Boston",
+                "country": "United States",
+                "pop": 4628910.01,
+            })
+        );
+    }
+
+    #[test]
+    fn several_double_dot_in_header() {
+        let documents = r#"city:love:string,country:state,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city:love": "Boston",
+                "country:state": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn ending_by_double_dot_in_header() {
+        let documents = r#"city:,country,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city:": "Boston",
+                "country": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn starting_by_double_dot_in_header() {
+        let documents = r#":city,country,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                ":city": "Boston",
+                "country": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn starting_by_double_dot_in_header2() {
+        let documents = r#":string,country,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "": "Boston",
+                "country": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn double_double_dot_in_header() {
+        let documents = r#"city::string,country,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert_eq!(
+            Value::Object(csv_iter.next().unwrap().unwrap()),
+            json!({
+                "city:": "Boston",
+                "country": "United States",
+                "pop": "4628910",
+            })
+        );
+    }
+
+    #[test]
+    fn bad_type_in_header() {
+        let documents = r#"city,country:number,pop
+"Boston","United States","4628910""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert!(csv_iter.next().unwrap().is_err());
+    }
+
+    #[test]
+    fn bad_column_count1() {
+        let documents = r#"city,country,pop
+"Boston","United States","4628910", "too much""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert!(csv_iter.next().unwrap().is_err());
+    }
+
+    #[test]
+    fn bad_column_count2() {
+        let documents = r#"city,country,pop
+"Boston","United States""#;
+
+        let mut csv_iter = CSVDocumentDeserializer::from_reader(documents.as_bytes()).unwrap();
+
+        assert!(csv_iter.next().unwrap().is_err());
+    }
+}
--- a/http-ui/src/main.rs
+++ b/http-ui/src/main.rs
@ -1,3 +1,4 @@
+mod documents_from_csv;
 mod update_store;

 use std::collections::{BTreeMap, BTreeSet, HashMap, HashSet};
@ -38,6 +39,7 @@ use warp::http::Response;
 use warp::Filter;

 use self::update_store::UpdateStore;
+use crate::documents_from_csv::CSVDocumentDeserializer;

 #[cfg(target_os = "linux")]
 #[global_allocator]
@ -1056,8 +1058,7 @@ fn documents_from_csv(reader: impl io::Read) -> anyhow::Result<Vec<u8>> {
    let mut writer = Cursor::new(Vec::new());
    let mut documents = milli::documents::DocumentBatchBuilder::new(&mut writer)?;

-    let mut records = csv::Reader::from_reader(reader);
-    let iter = records.deserialize::<Map<String, Value>>();
+    let iter = CSVDocumentDeserializer::from_reader(reader)?;

    for doc in iter {
        let doc = doc?;