First batch of PR comment

This commit is contained in:
ManyTheFish 2024-11-21 16:37:55 +01:00
parent 32bcacefd5
commit 36962b943b
16 changed files with 18 additions and 531 deletions

View file

@ -2,7 +2,7 @@ use std::io::{self, Write};
use grenad::{CompressionType, WriterBuilder};
use serde::de::Deserializer;
use serde_json::{to_writer, Value};
use serde_json::to_writer;
use super::{DocumentsBatchIndex, Error, DOCUMENTS_BATCH_INDEX_KEY};
use crate::documents::serde_impl::DocumentVisitor;
@ -87,95 +87,6 @@ impl<W: Write> DocumentsBatchBuilder<W> {
de.deserialize_any(&mut visitor)?
}
/// Appends a new CSV file into the batch and updates the `DocumentsBatchIndex` accordingly.
pub fn append_csv<R: io::Read>(&mut self, mut reader: csv::Reader<R>) -> Result<(), Error> {
// Make sure that we insert the fields ids in order as the obkv writer has this requirement.
let mut typed_fields_ids: Vec<_> = reader
.headers()?
.into_iter()
.map(parse_csv_header)
.map(|(k, t)| (self.fields_index.insert(k), t))
.enumerate()
.collect();
// Make sure that we insert the fields ids in order as the obkv writer has this requirement.
typed_fields_ids.sort_unstable_by_key(|(_, (fid, _))| *fid);
let mut record = csv::StringRecord::new();
let mut line = 0;
while reader.read_record(&mut record)? {
// We increment here and not at the end of the while loop to take
// the header offset into account.
line += 1;
self.obkv_buffer.clear();
let mut writer = obkv::KvWriter::new(&mut self.obkv_buffer);
for (i, (field_id, type_)) in typed_fields_ids.iter() {
self.value_buffer.clear();
let value = &record[*i];
let trimmed_value = value.trim();
match type_ {
AllowedType::Number => {
if trimmed_value.is_empty() {
to_writer(&mut self.value_buffer, &Value::Null)?;
} else if let Ok(integer) = trimmed_value.parse::<i64>() {
to_writer(&mut self.value_buffer, &integer)?;
} else {
match trimmed_value.parse::<f64>() {
Ok(float) => {
to_writer(&mut self.value_buffer, &float)?;
}
Err(error) => {
return Err(Error::ParseFloat {
error,
line,
value: value.to_string(),
});
}
}
}
}
AllowedType::Boolean => {
if trimmed_value.is_empty() {
to_writer(&mut self.value_buffer, &Value::Null)?;
} else {
match trimmed_value.parse::<bool>() {
Ok(bool) => {
to_writer(&mut self.value_buffer, &bool)?;
}
Err(error) => {
return Err(Error::ParseBool {
error,
line,
value: value.to_string(),
});
}
}
}
}
AllowedType::String => {
if value.is_empty() {
to_writer(&mut self.value_buffer, &Value::Null)?;
} else {
to_writer(&mut self.value_buffer, value)?;
}
}
}
// We insert into the obkv writer the value buffer that has been filled just above.
writer.insert(*field_id, &self.value_buffer)?;
}
let internal_id = self.documents_count.to_be_bytes();
let document_bytes = writer.into_inner()?;
self.writer.insert(internal_id, &document_bytes)?;
self.documents_count += 1;
}
Ok(())
}
/// Flushes the content on disk and stores the final version of the `DocumentsBatchIndex`.
pub fn into_inner(mut self) -> io::Result<W> {
let DocumentsBatchBuilder { mut writer, fields_index, .. } = self;
@ -189,35 +100,12 @@ impl<W: Write> DocumentsBatchBuilder<W> {
}
}
#[derive(Debug)]
enum AllowedType {
String,
Boolean,
Number,
}
fn parse_csv_header(header: &str) -> (&str, AllowedType) {
// if there are several separators we only split on the last one.
match header.rsplit_once(':') {
Some((field_name, field_type)) => match field_type {
"string" => (field_name, AllowedType::String),
"boolean" => (field_name, AllowedType::Boolean),
"number" => (field_name, AllowedType::Number),
// if the pattern isn't recognized, we keep the whole field.
_otherwise => (header, AllowedType::String),
},
None => (header, AllowedType::String),
}
}
#[cfg(test)]
mod test {
use std::io::Cursor;
use serde_json::json;
use super::*;
use crate::documents::{obkv_to_object, DocumentsBatchReader};
use crate::documents::DocumentsBatchReader;
#[test]
fn add_single_documents_json() {
@ -253,348 +141,4 @@ mod test {
assert!(cursor.next_document().unwrap().is_none());
}
#[test]
fn add_documents_csv() {
let csv_content = "id:number,field:string\n1,hello!\n2,blabla";
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
assert_eq!(builder.documents_count(), 2);
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
assert_eq!(index.len(), 2);
let document = cursor.next_document().unwrap().unwrap();
assert_eq!(document.iter().count(), 2);
let document = cursor.next_document().unwrap().unwrap();
assert_eq!(document.iter().count(), 2);
assert!(cursor.next_document().unwrap().is_none());
}
#[test]
fn simple_csv_document() {
let csv_content = r#"city,country,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
assert!(cursor.next_document().unwrap().is_none());
}
#[test]
fn coma_in_field() {
let csv_content = r#"city,country,pop
"Boston","United, States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city": "Boston",
"country": "United, States",
"pop": "4628910",
})
);
}
#[test]
fn quote_in_field() {
let csv_content = r#"city,country,pop
"Boston","United"" States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city": "Boston",
"country": "United\" States",
"pop": "4628910",
})
);
}
#[test]
fn integer_in_field() {
let csv_content = r#"city,country,pop:number
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910,
})
);
}
#[test]
fn integer_as_id() {
let csv_content = r#""id:number","title:string","comment:string"
"1239","Pride and Prejudice","A great book""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"id": 1239,
"title": "Pride and Prejudice",
"comment": "A great book",
})
);
}
#[test]
fn float_in_field() {
let csv_content = r#"city,country,pop:number
"Boston","United States","4628910.01""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city": "Boston",
"country": "United States",
"pop": 4628910.01,
})
);
}
#[test]
fn several_colon_in_header() {
let csv_content = r#"city:love:string,country:state,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city:love": "Boston",
"country:state": "United States",
"pop": "4628910",
})
);
}
#[test]
fn ending_by_colon_in_header() {
let csv_content = r#"city:,country,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn starting_by_colon_in_header() {
let csv_content = r#":city,country,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
":city": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[ignore]
#[test]
fn starting_by_colon_in_header2() {
let csv_content = r#":string,country,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, _) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
assert!(cursor.next_document().is_err());
}
#[test]
fn double_colon_in_header() {
let csv_content = r#"city::string,country,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv).unwrap();
let vector = builder.into_inner().unwrap();
let (mut cursor, index) = DocumentsBatchReader::from_reader(Cursor::new(vector))
.unwrap()
.into_cursor_and_fields_index();
let doc = cursor.next_document().unwrap().unwrap();
let val = obkv_to_object(doc, &index).map(Value::from).unwrap();
assert_eq!(
val,
json!({
"city:": "Boston",
"country": "United States",
"pop": "4628910",
})
);
}
#[test]
fn bad_type_in_header() {
let csv_content = r#"city,country:number,pop
"Boston","United States","4628910""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
assert!(builder.append_csv(csv).is_err());
}
#[test]
fn bad_column_count1() {
let csv_content = r#"city,country,pop
"Boston","United States","4628910", "too much
let csv = csv::Reader::from_reader(Cursor::new(csv_content"#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
assert!(builder.append_csv(csv).is_err());
}
#[test]
fn bad_column_count2() {
let csv_content = r#"city,country,pop
"Boston","United States""#;
let csv = csv::Reader::from_reader(Cursor::new(csv_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
assert!(builder.append_csv(csv).is_err());
}
}

View file

@ -253,33 +253,4 @@ mod test {
{"id": 2,"a": 0,"b": 0},
]);
}
#[test]
fn csv_types_dont_panic() {
let csv1_content =
"id:number,b:boolean,c,d:number\n1,,,\n2,true,doggo,2\n3,false,the best doggo,-2\n4,,\"Hello, World!\",2.5";
let csv1 = csv::Reader::from_reader(Cursor::new(csv1_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv1).unwrap();
let vector = builder.into_inner().unwrap();
DocumentsBatchReader::from_reader(Cursor::new(vector)).unwrap();
}
#[test]
fn out_of_order_csv_fields() {
let csv1_content = "id:number,b\n1,0";
let csv1 = csv::Reader::from_reader(Cursor::new(csv1_content));
let csv2_content = "id:number,a,b\n2,0,0";
let csv2 = csv::Reader::from_reader(Cursor::new(csv2_content));
let mut builder = DocumentsBatchBuilder::new(Vec::new());
builder.append_csv(csv1).unwrap();
builder.append_csv(csv2).unwrap();
let vector = builder.into_inner().unwrap();
DocumentsBatchReader::from_reader(Cursor::new(vector)).unwrap();
}
}