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Andrew Ammerlaan 7ec26f243d
sci-biology/salmon: add MissingUseDepDefault
5 months ago
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ABI-connectivity-data sci-biology/ABI-connectivity-data: remove RedundantLongDescription 11 months ago
ABI-expression-data sci-biology/ABI-expression-data: remove RedundantLongDescription 11 months ago
ANGLE-bin sci-biology/ANGLE-bin: EAPI bump, add missing deps 11 months ago
AlignGraph sci-biology/AlignGraph: fix MultipleKeywordsLines 10 months ago
BBmap sci-biology/BBmap: set use default for openmpi 1 year ago
BRAKER sci-biology/BRAKER: use perl_domodule 10 months ago
BRANCH sci-biology/BRANCH: fix MultipleKeywordsLines 10 months ago
BlastToSam sci-biology/BlastToSam: EAPI bump 11 months ago
CAT sci-biology/CAT: update homepage 12 months ago
FLASH sci-biology/FLASH: EAPI bump 1 year ago
Fastaq sci-biology/Fastaq: add version 3.17.0, add tests 12 months ago
GAL sci-biology/GAL: EAPI bump, fix fetching 1 year ago
IMAGE sci-biology/IMAGE: bdepend on unzip 1 year ago
KING sci-biology/KING: Remove old 2.2.5 8 months ago
KaKs_Calculator sci-biology/KaKs_Calculator: update homepage 1 year ago
MaSuRCA sci-biology/MaSuRCA: version bump 4.0.1 12 months ago
MeV sci-biology/MeV: fix fetch, fix install, EAPI bump 1 year ago
MochiView sci-biology/MochiView: fix homepage 12 months ago
MolBioLib sci-biology/MolBioLib: fix fetching 1 year ago
MuSeqBox sci-biology/MuSeqBox: drop version 3.4.2020 6 months ago
NGSEPcore sci-biology/NGSEPcore: now really fix java.eclassesnotused 10 months ago
NGSEPcore-bin sci-biology/NGSEPcore-bin: and also fix java.eclassesnotused here 10 months ago
OBO-Edit sci-biology/OBO-Edit: quote unqouted variable 1 year ago
ONTO-PERL sci-biology/ONTO-PERL: version bump 1.45, fetching fixed 1 year ago
ParaAT sci-biology/ParaAT: EAPI bump 11 months ago
RAILS sci-biology/RAILS: version bump 2 years ago
RSeQC sci-biology/RSeQC: fix homepage 1 year ago
Rcorrector sci-biology/Rcorrector: bump 1.0.4, EAPI bump, add keywords 11 months ago
SEECER sci-biology/SEECER: EAPI bump, patch, remove files, fix build system 6 months ago
SOAPdenovo2 sci-biology/SOAPdenovo2: version bump 242 12 months ago
SPAdes sci-biology/SPAdes: dropping KEYWORDS 11 months ago
SSAKE sci-biology/SSAKE: EAPI bump 11 months ago
SnpEff sci-biology/SnpEff: fix install 1 year ago
SolexaQA sci-biology/SolexaQA: drop old 11 months ago
TransDecoder sci-biology/TransDecoder: remove unnecessary slash strip 1 year ago
Trinotate sci-biology/Trinotate: use perl_domodule 10 months ago
VarScan sci-biology/VarScan: EAPI bump, vers bump, fix fetch 11 months ago
VarScan-bin sci-biology/VarScan-bin: version bump, EAPI bump, fix fetch 11 months ago
VelvetOptimiser sci-biology/VelvetOptimiser: use perl_domodule 10 months ago
YASRA sci-biology/YASRA: EAPI bump 7 1 year ago
abacas sci-biology/abacas: EAPI bump, fix optfeature 11 months ago
abyss sci-biology/abyss: add 2.3.1 release but keep patches 9 months ago
act-bin sci-biology/act-bin: EAPI bump 11 months ago
afni sci-biology/afni: added missing patch file 12 months ago
aghermann sci-biology/aghermann: correctly depend on lua 12 months ago
align_to_scf sci-biology/align_to_scf: EAPI bump, fix build 11 months ago
angsd sci-biology/angsd: EAPI bump, add 0.933, add keywords 11 months ago
ants sci-biology/ants: conditional test restriction 1 year ago
arachne sci-biology/arachne: EAPI bump 12 months ago
assembly-stats sci-biology/assembly-stats: cmake-utils --> cmake, fix install 1 year ago
bam-readcount sci-biology/bam-readcount: cmake-utils --> cmake, EAPI bump 1 year ago
bambus sci-biology/bambus: EAPI bump 11 months ago
bamql sci-biology/bamql: switch to `$(use_enable ...)` 3 years ago
barrnap sci-biology/barrnap: update homepage 1 year ago
beagle sci-biology/beagle: version bump, fix fetch 1 year ago
beaglecall sci-biology/beaglecall: EAPI bump, fix compile, add keywords 12 months ago
bedops sci-biology/bedops: fixup the old version 11 months ago
behaviopy */*: drop obsolete python_targets_python3_6 12 months ago
biobambam2 sci-biology/biobambam2: add keyword 12 months ago
bismark sci-biology/bismark: drop old 11 months ago
blasr sci-biology/blasr: add MissingUseDepDefault 5 months ago
bowtie sci-biology/bowtie: add version 1.3.0 10 months ago
brat sci-biology/brat: EAPI bump 11 months ago
brat_bw sci-biology/brat_bw: EAPI bump 11 months ago
brat_nova sci-biology/brat_nova: EAPI bump 11 months ago
bru2nii sci-biology/bru2nii: removed old version 2 years ago
bruker2nifti sci-biology/bruker2nifti: bump python compat 1 year ago
bx-python sci-biology/bx-python: update homepage 12 months ago
caftools sci-biology/caftools: EAPI bump 12 months ago
canu sci-biology/canu: use perl_domodule 10 months ago
cast-bin sci-biology/cast-bin: EAPI bump 11 months ago
cdbfasta sci-biology/cdbfasta: EAPI bump 11 months ago
chiron sci-biology/chiron: bump py targets, add keywords 1 year ago
cluster sci-biology/cluster: version bump 1.59, fix doc path 11 months ago
clview sci-biology/clview: EAPI bump 11 months ago
cnrun sci-biology/cnrun: use lua-single instead 12 months ago
codonw sci-biology/codonw: EAPI bump 1 year ago
conform-gt sci-biology/conform-gt: fix fetch, add keywords 1 year ago
conrad sci-biology/conrad: depend on unzip 1 year ago
coral sci-biology/coral: EAPI bump, vers bump, fix build 11 months ago
cortex_var sci-biology/cortex_var: use perl_domodule 10 months ago
cramtools sci-biology/cramtools: EAPI bump, fix install, add keywords 12 months ago
cross_genome sci-biology/cross_genome: fix fetch 1 year ago
cutadapt sci-biology/cutadapt: version bump to 3.3 8 months ago
dargcc_bidsdata Updated developer email address. 1 year ago
dcm2niix sci-biology/dcm2niix: add version 1.0.20210317 8 months ago
dcmstack */*: drop obsolete python_targets_python3_6 12 months ago
deeptools sci-biology/deeptools: version bump, bump py targets, enable sphinx 1 year ago
deeptools-intervals sci-biology/deeptools-intervals: new dep 1 year ago
diamond sci-biology/diamond: version bump 2.0.6, cmake-utils --> cmake 1 year ago
dipy sci-biology/dipy: bump PYTHON_COMPAT in 9999 to match latest release 8 months ago
drlfom_bidsdata Updated developer email address. 1 year ago
edena sci-biology/edena: remove whitespace 10 months ago
epga sci-biology/epga: fix MultipleKeywordsLines 10 months ago
erpin sci-biology/erpin: remove nonexistent blocker 11 months ago
estscan sci-biology/estscan: remove PN from homepage 1 year ago
exonerate-gff3 sci-biology/exonerate-gff3: remove keyword from live ebuild 1 year ago
fastdnaml sci-biology/fastdnaml: EAPI bump 11 months ago
fastqc sci-biology/fastqc: correctly install the package. 1 year ago
ffindex sci-biology/ffindex: versio bump, fix fetching 1 year ago
flexbar sci-biology/flexbar: version bump, cmake-utils --> cmake 1 year ago
freebayes sci-biology/freebayes: version bump 1.3.5, EAPI bump 11 months ago
fsa sci-biology/fsa: EAPi bump, fix fetch 1 year ago
fsl sci-biology/fsl: add version 6.0.4 6 months ago
gemini sci-biology/gemini: bump py targets, add keywords 1 year ago
genepop sci-biology/genepop: fix fetch, cmake-utils --> cmake 1 year ago
genomeview-bin sci-biology/genomeview-bin: bdepend on unzip 1 year ago
germline sci-biology/germline: version bump, EAPI bump 1 year ago
gffcompare sci-biology/gffcompare: cleanup old 11 months ago
gffread sci-biology/gffread: bump to 0.11.0, drop old patch, use sed hackery 3 years ago
gffutils sci-biology/gffutils: drop py3.6 1 year ago
glean sci-biology/glean: use perl_domodule 10 months ago
grabix sci-biology/grabix: EAPI bump 11 months ago
graf-bin sci-biology/graf-bin: fix fetch, fix install, EAPI bump 1 year ago
grappa sci-biology/grappa: Apply gcc-10 workaround 11 months ago
hexamer sci-biology/hexamer: EAPI bump 11 months ago
hisat2 sci-biology/hisat2: EAPI bump 11 months ago
idba sci-biology/idba: version bump 1.1.3, EAPI bump 11 months ago
imagej sci-biology/imagej: version bump, EAPI bump, add keywords 1 year ago
irsabi_bidsdata Updated developer email address. 1 year ago
jannovar-bin sci-biology/jannovar-bin: version bump 0.35, unmask 1 year ago
jellyfish sci-biology/jellyfish: Call econf in src_configure in 1.1.12 8 months ago
jigsaw sci-biology/jigsaw: define correct compile and install phases 12 months ago
jtreeview sci-biology/jtreeview: use perl_domodule 10 months ago
jtreeview-bin sci-biology/jtreeview-bin: use perl_domodule 10 months ago
karect sci-biology/karect: EAPI bump 11 months ago
kat sci-biology/kat: remove keywords from live ebuild 1 year ago
khmer sci-biology/khmer: version bump 2.1.1 1 year ago
kmergenie sci-biology/kmergenie: version bump, correctly depend on python 12 months ago
kraken sci-biology/kraken: add kraken version 2 10 months ago
last sci-biology/last: clean up unused patches 12 months ago
lastz sci-biology/lastz: EAPI bump 11 months ago
lemur-brain-atlas Updated developer email address. 1 year ago
libBigWig sci-biology/libBigWig: drop old version 1 year ago
libblasr sci-biology/libblasr: add libblasr, dep of blasr 1 year ago
lighter sci-biology/lighter: fix MultipleKeywordsLines 10 months ago
lucy sci-biology/lucy: fix fetch, EAPI bump 1 year ago
lumpy-sv sci-biology/lumpy-sv: EAPI bump, fix build 11 months ago
mRNAmarkup sci-biology/mRNAmarkup: version bump, fix fetch 1 year ago
manatee-igs sci-biology/manatee-igs: EAPI bump, fix fetch, use https 1 year ago
manatee-jcvi sci-biology/manatee-jcvi: add some missing deps 12 months ago
mappy sci-biology/mappy: new dep 1 year ago
megahit sci-biology/megahit: EAPI bump, fix build 11 months ago
merlin sci-biology/merlin: EAPI bump 11 months ago
minced sci-biology/minced: fix build 11 months ago
minimap2 sci-biology/minimap2: remove redundanturirename 10 months ago
mip-scaffolder sci-biology/mip-scaffolder: EAPI bump 11 months ago
miranda sci-biology/miranda: update homepage: connect timeout 11 months ago
mouse-brain-atlases sci-biology/mouse-brain-atlases: remove RedundantLongDescription 11 months ago
mouse-brain-templates sci-biology/mouse-brain-templates: new package 10 months ago
mreps sci-biology/mreps: version bump, fix fetch 1 year ago
mrfast sci-biology/mrfast: Port to EAPI 7 11 months ago
mrsfast sci-biology/mrsfast: fix fetch, version bump 1 year ago
msautil sci-biology/msautil: EAPI bump 12 months ago
nanopolish sci-biology/nanopolish: EAPI bump 11 months ago
ncbi-blast+ sci-biology/ncbi-blast+: add MissingUseDepDefault 5 months ago
ncbi-genome-download sci-biology/ncbi-genome-download: remove short longdescription 1 year ago
ncbi-tools++ sci-biology/ncbi-tools++: add MissingUseDepDefault 5 months ago
nextclip sci-biology/nextclip: EAPI bump 11 months ago
nilearn sci-biology/nilearn: bump PYTHON_COMPAT in 9999 to match last release 8 months ago
nitime sci-biology/nitime: bump python compat 1 year ago
nrcl sci-biology/nrcl: EAPI bump 11 months ago
ntCard sci-biology/ntCard: EAPI bump, vers bump 11 months ago
nwalign3 sci-biology/nwalign3: fix python dependencies 12 months ago
nxtrim sci-biology/nxtrim: EAPI bump, vers 0.4.3, fix install 11 months ago
oases sci-biology/oases: EAPI bump, fix patch 12 months ago
open-ephys-gui sci-biology/open-ephys-gui: remove RedundantLongDescription 11 months ago
opfvta_bidsdata Updated developer email address. 1 year ago
pairagon sci-biology/pairagon: fix fetching 1 year ago
parafly sci-biology/parafly: fix this, EAPI bump 11 months ago
pbbam sci-biology/pbbam: add 1.6.0 version 1 year ago
pbcopper sci-biology/pbcopper: add MissingUseDepDefault 5 months ago
perga sci-biology/perga: EAPI bump, fix build 10 months ago
perlprimer sci-biology/perlprimer: EAPI bump 11 months ago
phusion2 sci-biology/phusion2: EAPI bump, add keywords 12 months ago
pileup sci-biology/pileup: EAPI bump 12 months ago
pilon-bin sci-biology/pilon-bin: version bump, EAPI bump 11 months ago
polyphen sci-biology/polyphen: add bdep on unzip 12 months ago
portrait sci-biology/portrait: EAPI bump 12 months ago
primerD sci-biology/primerD: move RESTRICT 5 months ago
prinseq-lite sci-biology/prinseq-lite: EAPI bump 12 months ago
proda sci-biology/proda: EAPI bump 1 year ago
prokka sci-biology/prokka: version bump. fix fetch 1 year ago
proovread sci-biology/proovread: fix MultipleKeywordsLines 10 months ago
psx sci-biology/psx: EAPi bump 11 months ago
pufferfish sci-biology/pufferfish: new dep of salmon 1 year ago
pybedtools sci-biology/pybedtools: drop py3.6 1 year ago
pyfaidx sci-biology/pyfaidx: version bump, bump py_targets 1 year ago
pysamstats sci-biology/pysamstats: bump py targets, add keywords 1 year ago
quast sci-biology/quast: version bump, add keywords, bump py targets 1 year ago
quicktree sci-biology/quicktree: cleanup old 11 months ago
quorum sci-biology/quorum: EAPI bump, fix build 11 months ago
rat-brain-templates sci-biology/rat-brain-templates: new package 12 months ago
rnaplex sci-biology/rnaplex: Port to EAPI 7 11 months ago
roche454ace2caf sci-biology/roche454ace2caf: EAPI bump 12 months ago
rtg-tools sci-biology/rtg-tools: EAPI bump, add keywords 11 months ago
ruffus sci-biology/ruffus: version bump, bump py targets, enable sphinx 1 year ago
sabre sci-biology/sabre: fix MultipleKeywordsLines 10 months ago
sailfish sci-biology/sailfish: fix configure phase 12 months ago
salmon sci-biology/salmon: add MissingUseDepDefault 5 months ago
sambamba sci-biology/sambamba: give tarball a proper name 12 months ago
samri sci-biology/samri: PYTHON_COMPAT update 1 year ago
samri_bidsdata sci-biology/samri_bidsdata: remove RedundantLongDescription 11 months ago
samri_bindata sci-biology/samri_bindata: remove RedundantLongDescription 11 months ago
samstat sci-biology/samstat: Port to EAPI 7 11 months ago
scan_for_matches sci-biology/scan_for_matches: EAPI bump 11 months ago
screed sci-biology/screed: version bump 1.0.4 1 year ago
scythe sci-biology/scythe: EAPI bump 11 months ago
seqtk sci-biology/seqtk: use "${PV}" 3 years ago
seqtools sci-biology/seqtools: EAPI bump 11 months ago
sff_dump sci-biology/sff_dump: EAPI bump 11 months ago
sga sci-biology/sga: EAPI bump 11 months ago
sickle sci-biology/sickle: fix MultipleKeywordsLines 10 months ago
signalp sci-biology/singalp: fix MisplacedVariable 10 months ago
skewer-bin sci-biology/skewer-bin: version bump, EAPI bump, fix fetch 1 year ago
smalt sci-biology/smalt: EAPI bump, unmask 1 year ago
smalt-bin sci-biology/smalt-bin: version bump, EAPI bump 1 year ago
snap sci-biology/snap: Port to EAPI 7 11 months ago
snpomatic sci-biology/snpomatic: fix MultipleKeywordsLines 10 months ago
spm sci-biology/spm: cleanup old 11 months ago
sra_sdk sci-biology/sra_sdk: call configure correctly for this pack 12 months ago
ssaha2-bin sci-biology/ssaha2-bin: EAPI bump 11 months ago
stacks sci-biology/stacks: version bump, EAPI bump 12 months ago
staden sci-biology/staden: fix configure phase 12 months ago
staden_doc sci-biology/staden_doc: add keywords 12 months ago
stringtie sci-biology/stringtie: fix checksum in manifest 11 months ago
subread sci-biology/subread: Fix build with gcc-10 11 months ago
swissknife sci-biology/swissknife: version bump, fix fetch 1 year ago
symap sci-biology/symap: version bump, EAIP bump 12 months ago
tabixpp sci-biology/tabixpp: add new dep for vcflib 11 months ago
tagdust sci-biology/tagdust: Port to EAPI 7 11 months ago
tigmint sci-biology/tigmint: version bump, bump py targets, add keywords 1 year ago
tigr-foundation-libs sci-biology/tigr-foundation-libs: EAPI bump 11 months ago
tmhmm sci-biology/tmhmm: fix MisplacedVariable 10 months ago
trans-abyss sci-biology/trans-abyss: bump python compat 9 months ago
trf-bin sci-biology/trf-bin: EAPi bump 11 months ago
trim_galore sci-biology/trim_galore: version bump 0.6.6, fix fetching 1 year ago
trimmomatic sci-biology/trimmomatic: EAPI bump 11 months ago
trinityrnaseq sci-biology/trinityrnaseq: use perl_domodule 10 months ago
twinscan sci-biology/twinscan: use perl_domodule 10 months ago
ugene sci-biology/ugene: add back CONFIG_OPTS from old ebuild 10 months ago
vague-bin sci-biology/vague-bin: fix MultipleKeywordsLines 10 months ago
vcflib sci-biology/vcflib: add missing dep 11 months ago
verifyBamID sci-biology/verifyBamID: fix checksum in Manifest 11 months ago
vt sci-biology/vt: EAPI bump 11 months ago
wcd sci-biology/wcd: add missing trailing slash 1 year ago
weblogo */*: drop obsolete python_targets_python3_6 12 months ago
wgs_tools sci-biology/wgs_tools: use https 11 months ago
yaha sci-biology/yaha: EAPI bump 11 months ago
zmap sci-biology/zmap: use https for homepage 12 months ago
zmsort */*: replace dead homepage compbio.dfci.harvard.edu to archive link 11 months ago