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sci-chemistry/talosn: remove last-rited pack

Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
master
Andrew Ammerlaan 3 weeks ago
parent
commit
e97b1a4d5f
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  1. 9
      profiles/package.mask
  2. 1
      sci-chemistry/talosn/Manifest
  3. 8
      sci-chemistry/talosn/metadata.xml
  4. 68
      sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild

9
profiles/package.mask

@ -29,12 +29,3 @@
## app-misc/some-package
#--- END OF EXAMPLES ---
# Andrew Ammerlaan <andrewammerlaan@gentoo.org> (02 Aug 2021)
# These packages depend on ncbi-tools which is being removed from ::gentoo:
# Last release 10 years ago, EOL upstream, no other distro packages this
# anymore, tons of bugs. Revdeps are unmaintained too and out of date.
# Bug #798015, removal in 30 days.
# Perhaps these packages work with the newer ncbi-tools++? If anyone is actively
# using these packages please open a bug report
sci-chemistry/talosn

1
sci-chemistry/talosn/Manifest

@ -1 +0,0 @@
DIST talosn-4.12.2015.147.15.40.tgz 137074857 BLAKE2B 950ed21334b4e2b97164ba90b9a60f4f7ad738da955d763c0388bbad3029dd8d49e0e443309e0faaa0028375fb3a0e28291f805075cadffe96c985cc9618f296 SHA512 2d4150434687e394303cabb5153b39037f427dd7137650beeaac1f161fdb1c77c43a37fe61df3182b9a4425d88ef531f4a855a88bd5e9ed19ed662640b347df9

8
sci-chemistry/talosn/metadata.xml

@ -1,8 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="project">
<email>sci-chemistry@gentoo.org</email>
<name>Gentoo Chemistry Project</name>
</maintainer>
</pkgmetadata>

68
sci-chemistry/talosn/talosn-4.12.2015.147.15.40.ebuild

@ -1,68 +0,0 @@
# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit java-pkg-opt-2
DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts"
HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/"
SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz"
SLOT="0"
LICENSE="all-rights-reserved"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="examples"
DEPEND=">=virtual/jre-1.5:*"
RDEPEND="${DEPEND}
app-shells/tcsh
sci-biology/ncbi-tools"
S="${WORKDIR}"
QA_PREBUILT="/opt/.*"
src_prepare() {
default
local s64
use amd64 || s64="_x64"
rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die
sed \
-e '/setenv TALOSN_DIR/d' \
-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \
-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \
-i talosn_ss || die
}
src_install() {
local TALOSN="/opt/${PN}"
exeinto ${TALOSN}/bin
doexe bin/*
exeinto ${TALOSN}/com
doexe com/*
exeinto /opt/bin
doexe talosn{,_ss}
insinto ${TALOSN}
doins -r tab
java-pkg_jarinto ${TALOSN}
java-pkg_dojar rama.jar
java-pkg_dolauncher jrama --jar rama.jar -into /opt/
if use examples; then
insinto /usr/share/${PN}
doins -r demo
fi
cat >> "${T}"/40talosn <<- EOF
TALOSN_DIR="${EPREFIX}/${TALOSN}"
#BLASTDB=
EOF
doenvd "${T}"/40talosn
}
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