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DIST talosn-4.12.2015.147.15.40.tgz 137074857 BLAKE2B 950ed21334b4e2b97164ba90b9a60f4f7ad738da955d763c0388bbad3029dd8d49e0e443309e0faaa0028375fb3a0e28291f805075cadffe96c985cc9618f296 SHA512 2d4150434687e394303cabb5153b39037f427dd7137650beeaac1f161fdb1c77c43a37fe61df3182b9a4425d88ef531f4a855a88bd5e9ed19ed662640b347df9 |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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<maintainer type="project"> |
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<email>sci-chemistry@gentoo.org</email> |
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<name>Gentoo Chemistry Project</name> |
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</maintainer> |
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</pkgmetadata> |
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# Copyright 1999-2021 Gentoo Authors |
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# Distributed under the terms of the GNU General Public License v2 |
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EAPI=7 |
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inherit java-pkg-opt-2 |
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DESCRIPTION="Prediction of Protein bb and sc Torsion Angles from NMR Chemical Shifts" |
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HOMEPAGE="https://spin.niddk.nih.gov/bax/software/TALOS-N/" |
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SRC_URI="https://spin.niddk.nih.gov/bax/software/TALOS-N/talosn.tZ -> ${P}.tgz" |
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SLOT="0" |
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LICENSE="all-rights-reserved" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
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IUSE="examples" |
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DEPEND=">=virtual/jre-1.5:*" |
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RDEPEND="${DEPEND} |
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app-shells/tcsh |
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sci-biology/ncbi-tools" |
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S="${WORKDIR}" |
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QA_PREBUILT="/opt/.*" |
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src_prepare() { |
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default |
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local s64 |
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use amd64 || s64="_x64" |
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rm -f bin/TALOSN.{linux,mac,static.*,winxp,linux9${s64}} || die |
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|
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sed \ |
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-e '/setenv TALOSN_DIR/d' \ |
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-e "/set BLAST/s:=.*:= \"${EPREFIX}/usr/bin/blastpgp\":g" \ |
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-e '/set NR_DBNAME/s:=.*:= ${BLASTDB}:g' \ |
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-i talosn_ss || die |
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} |
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src_install() { |
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local TALOSN="/opt/${PN}" |
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exeinto ${TALOSN}/bin |
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doexe bin/* |
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exeinto ${TALOSN}/com |
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doexe com/* |
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exeinto /opt/bin |
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doexe talosn{,_ss} |
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insinto ${TALOSN} |
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doins -r tab |
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java-pkg_jarinto ${TALOSN} |
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java-pkg_dojar rama.jar |
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java-pkg_dolauncher jrama --jar rama.jar -into /opt/ |
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if use examples; then |
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insinto /usr/share/${PN} |
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doins -r demo |
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fi |
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cat >> "${T}"/40talosn <<- EOF |
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TALOSN_DIR="${EPREFIX}/${TALOSN}" |
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#BLASTDB= |
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EOF |
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doenvd "${T}"/40talosn |
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} |
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