You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
 
 
 
 
Aisha Tammy 8292b49e51
sci-libs/mlpack: version bump to 3.4.1
3 hours ago
app-arch/libdeflate app-arch/libdeflate: version bump 1 week ago
app-doc app-doc/root-docs: removal due to migration of sci-physics/root 2 years ago
app-forensics/vine Update Manifests to new hashes 2 years ago
app-vim/vim-gromacs Second try to clean spaces in metadata.xml 2 years ago
dev-cpp dev-cpp/xor_singleheader: move to dev-cpp 3 days ago
dev-java dev-java/scirenderer: removed old package 4 days ago
dev-lang dev-lang/vtune: version bump to 2020 update 1 4 months ago
dev-libs dev-libs/optix: Add optix v7.{1.0,0.0} 2 days ago
dev-ml/lacaml dev-ml/mlgmpidl: drop dead package 4 days ago
dev-perl dev-{python,perl}/opal-client: drop dead packages 6 days ago
dev-python dev-python/pylibconfig2: drop dead package 1 day ago
dev-tcltk Update Manifests to new hashes 2 years ago
dev-util dev-util/amdapp: drop dead package 1 day ago
docs virtual/{{c,}blas,lapack{,e}}: replaced by counterparts in ::gentoo. 1 year ago
eclass dev-libs/intel-common: EAPI bump in intel-sdp-r1 eclass 1 year ago
licenses Add UCSF-Motioncor2 license 11 months ago
media-gfx/brlcad media-gfa/PhiloGL: drop dead package 2 days ago
media-libs media-libs/avbin-bin: removed deprecated package 2 days ago
metadata metadata: Updated default repository path 10 months ago
net-ftp Update Manifests to new hashes 2 years ago
net-misc net-misc/cernbox-client: Fix USE-deps 2 years ago
patches patches: removed patch for deprecated package 1 day ago
profiles profiles: removed deprecated masking 6 months ago
sci-astronomy sci-astronomy/topcat: drop package 2 days ago
sci-biology sci-biology/gatk: removed package with missing dep 1 day ago
sci-chemistry sci-chemistry/shiftx: removed discontinued package 1 day ago
sci-electronics/minipro sci-electronics/tnt: drop dead package 3 days ago
sci-libs sci-libs/mlpack: version bump to 3.4.1 3 hours ago
sci-mathematics sci-mathematics/dolfin: removed package with missing dep 11 hours ago
sci-misc sci-misc/omorfi: drop dead package 1 day ago
sci-physics sci-physics/bigdft: removed discontinued package 1 day ago
sci-visualization sci-visualization/clip: fast cli chart generator 14 hours ago
scripts virtual/{{c,}blas,lapack{,e}}: replaced by counterparts in ::gentoo. 1 year ago
sys-cluster sys-cluster/htcondor: updated dependency list 10 hours ago
virtual virtual/geant: drop unneeded virtual 1 day ago
x11-libs x11-libs/agg: Remove 1 year ago
x11-misc/envytools Consistently ident with tabs 2 years ago
.gitignore profiles: remove use.local.desc permanently 2 years ago
.travis.yml Travis CI - update to latest 1 day ago
CONTRIBUTING.md Fix broken Markdown headings 3 years ago
README.md README expansion 2 days ago
skel.ebuild header.txt, skel.ebuild: Update for new copyright policy. 1 year ago
skel.metadata.xml skel.metadata.xml: update for GLEP 67 1 year ago

README.md

The Gentoo Science Project Repository

Build Status

This is an official mirror of the Gentoo Science Projects ebuild repository which provides numerous scientific software packages.

The Gentoo developer manual take precedence over any information here.

See Project:Science for more information on the project.

Contents

  1. Installation and usage
  1. Contributor guidelies

Install

Manual install

As per the current Portage specifications, ebuild repositories (a.k.a. overlays) can be managed via file collections under /etc/portage/repos.conf/, via the new plug-in sync system.

To enable our overlay without the need for additional software, you first need to have git(1) installed:

emerge --ask --verbose dev-vcs/git 

Then you can add the custom entry for the science repository by downloading the science.conf file

wget https://gitweb.gentoo.org/proj/sci.git/plain/metadata/science.conf \
	-O /etc/portage/repos.conf/science

To start using the overlay you now only need to sync the overlay, via

emaint sync --repo science

or the traditional

emerge --sync

Manual uninstall

To uninstall the overlay simply run:

rm /etc/portage/repos.conf/science
rm /var/db/repos/science -rf

Layman install

You can also install the overlay via the layman overlay manager

layman --add science

Layman uninstall

To delete the overlay run

layman --delete science

Using packages from ::science

To enable the packges from ::science you need to make sure that you are accepting the ~${ARCH} keywords for your respective arch.

Make sure that the /etc/portage/package.accept_keywords/ folder exists and run

printf '*/*::science ~%s' "$(portageq envvar ARCH)" >> /etc/portage/package.accept_keywords/SCIENCE

Generic guidelines for contributors

If you fork, we will merge!
We are always going to welcome new contributors and love expanding our collection.

For basic guidelines please see our contributing guide.

The GURU Project has created excellent documentation for potential contributors.
We highly advise you to give them a read along with other general Gentoo guidelines

In addition to the above guidelines please make sure that if you submitting a new package, please add the Science Project as an additional maintainer to the package.
For an example, take a look at the metadata for the Numba package - dev-python/numba/metadata.xml

Support

You can ask for help on Freenode IRC in #gentoo-science.
Alternatively you can report bugs on the GitHub issues page.