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TheChymera-overlay/sci-biology/fsl/files/fsl-6.0.2-no_xmlpp.patch

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From 9de29e5141afa43c06f347ca158b67168fbb0031 Mon Sep 17 00:00:00 2001
From: François Bissey <frp.bissey@gmail.com>
Date: Mon, 20 Jan 2020 11:46:52 +1300
Subject: [PATCH] Build without xmlpp since we use an external ciftilib that
doesnt require it. Replace it and other ciftilib flags with CIFTICFLAGS.
---
src/flameo/Makefile | 4 ++--
src/melodic/Makefile | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/flameo/Makefile b/src/flameo/Makefile
index d22eb965..e967e682 100644
--- a/src/flameo/Makefile
+++ b/src/flameo/Makefile
@@ -2,7 +2,7 @@ include ${FSLCONFDIR}/default.mk
PROJNAME = flame
-USRINCFLAGS = -I${INC_NEWMAT} -I${INC_PROB} -I${INC_ZLIB} -DCIFTILIB_USE_XMLPP -I${FSLEXTINC} -I${INC_XML2} -I${INC_XML++} -I${INC_XML++CONF} -I${INC_BOOST} -I${FSLDIR}/include/ciftiio
+USRINCFLAGS = -fPIC -I${INC_NEWMAT} -I${INC_PROB} -I${INC_ZLIB} -I${FSLEXTINC} ${CIFTICFLAGS} -I${INC_BOOST} -I${FSLDIR}/include/ciftiio
USRLDFLAGS = -L${LIB_NEWMAT} -L${LIB_PROB} -L${LIB_ZLIB}
UNAME := $(shell uname)
@@ -10,7 +10,7 @@ ifeq (${UNAME},Darwin)
LIBS = -liconv
endif
-LIBS += -lutils -lnewimage -lmiscmaths -lm -lnewmat -lNewNifti -lcifti -lxml++-2.6 -lxml2 -lboost_filesystem -lboost_system -lznz -lprob -lz
+LIBS += -lutils -lnewimage -lmiscmaths -lm -lnewmat -lNewNifti ${CIFTILIBS} -lboost_filesystem -lboost_system -lznz -lprob -lz
XFILES = flameo
diff --git a/src/melodic/Makefile b/src/melodic/Makefile
index 50666517..0c356a2d 100644
--- a/src/melodic/Makefile
+++ b/src/melodic/Makefile
@@ -7,7 +7,7 @@ OPTFLAGS_alphaev6-dec-osf5.0-gcc2.95.2 = -O3 -mieee -mfp-trap-mode=sui
PROJNAME = melodic
-USRINCFLAGS = -I${INC_NEWMAT} -I${INC_PROB} -I${INC_GD} -I${INC_GDC} -I${INC_PNG} -I${INC_ZLIB} -DCIFTILIB_USE_XMLPP -I${FSLEXTINC} -I${INC_XML2} -I${INC_XML++} -I${INC_XML++CONF} -I${INC_BOOST} -I${FSLDIR}/include/ciftiio
+USRINCFLAGS = -fPIC -I${INC_NEWMAT} -I${INC_PROB} -I${INC_GD} -I${INC_GDC} -I${INC_PNG} -I${INC_ZLIB} -I${FSLEXTINC} ${CIFTICFLAGS} -I${INC_BOOST} -I${FSLDIR}/include/ciftiio
USRLDFLAGS = -L${LIB_NEWMAT} -L${LIB_PROB} -L${LIB_GD} -L${LIB_GDC} -L${LIB_PNG} -L${LIB_ZLIB}
UNAME := $(shell uname)
@@ -15,7 +15,7 @@ ifeq (${UNAME},Darwin)
LIBS = -liconv
endif
-LIBS += -lutils -lnewimage -lmiscplot -lmiscpic -lmiscmaths -lNewNifti -lcifti -lxml++-2.6 -lxml2 -lboost_filesystem -lboost_system -lznz -lnewmat -lprob -lm -lgdc -lgd -lpng -lz
+LIBS += -lutils -lnewimage -lmiscplot -lmiscpic -lmiscmaths -lNewNifti ${CIFTILIBS} -lboost_filesystem -lboost_system -lznz -lnewmat -lprob -lm -lgdc -lgd -lpng -lz
TEST_OBJS = test.o
--
2.24.1