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TheChymera-overlay/sci-biology/fsl/files/fsl-5.0.11-qstring_compat.patch
Horea Christian ed14ef2be5
sci-biology/fsl: attempt at version bump 6.0.2
Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Horea Christian <chr@chymera.eu>
2019-11-06 23:30:23 +01:00

64 lines
2.8 KiB
Diff

From bbd60f634cdcdfbbb3eb8f3b6d00f366d9f34bf9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fran=C3=A7ois=20Bissey?= <frp.bissey@gmail.com>
Date: Thu, 18 Oct 2018 11:21:05 +1300
Subject: [PATCH] Basic compatibility between for AString built with either
glib ustring or QString
---
src/flameo/gsa.cc | 4 ++--
src/melodic/meldata.cc | 2 +-
src/melodic/meldata.h | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/src/flameo/gsa.cc b/src/flameo/gsa.cc
index 6a477f9..0860d46 100644
--- a/src/flameo/gsa.cc
+++ b/src/flameo/gsa.cc
@@ -74,7 +74,7 @@ namespace GSA {
sourceType=mode;
if ( sourceType.compare("CIFTI") == 0 ) {
cifti::CiftiFile inputCifti;
- inputCifti.openFile(fslbasename(filename)+".nii");
+ inputCifti.openFile((fslbasename(filename)+".nii").c_str());
ciftiExemplar=inputCifti.getCiftiXML();
cerr << "ndim " << ciftiExemplar.getNumberOfDimensions() << endl;
cerr << "type1 " << ciftiExemplar.getMappingType(0) << endl;
@@ -194,7 +194,7 @@ namespace GSA {
scalarsMap.setLength(data.Nrows());
ciftiExemplar.setMap(0, scalarsMap);
CiftiFile outputFile;
- outputFile.setWritingFile(fslbasename(filename)+extension+".nii");//sets up on-disk writing with default writing version
+ outputFile.setWritingFile((fslbasename(filename)+extension+".nii").c_str());//sets up on-disk writing with default writing version
outputFile.setCiftiXML(ciftiExemplar,false);
vector<float> scratchRow(data.Nrows());//read/write a row at a time
for (int64_t row=0;row<data.Ncols();row++) {
diff --git a/src/melodic/meldata.cc b/src/melodic/meldata.cc
index f310dc7..5e9bc18 100644
--- a/src/melodic/meldata.cc
+++ b/src/melodic/meldata.cc
@@ -118,7 +118,7 @@ namespace Melodic{
tmpData = RawData.matrix(Mask);
memmsg(" after reshape ");
} else { //Read in Cifti
- inputCifti.openFile(fname+".nii");
+ inputCifti.openFile((fname+".nii").c_str());
const vector<int64_t>& dims = inputCifti.getDimensions();
tmpData.ReSize(dims[0],dims[1]); //swapped compared to cifti
vector<float> scratchRow(dims[0]);//read/write a row at a time
diff --git a/src/melodic/meldata.h b/src/melodic/meldata.h
index 1e1adfc..d898152 100644
--- a/src/melodic/meldata.h
+++ b/src/melodic/meldata.h
@@ -109,7 +109,7 @@ namespace Melodic{
message(" " << logger.appendDir(fname) << endl);
} else { //Process CIFTI save ICs as float
cifti::CiftiFile outputFile;
- outputFile.setWritingFile(logger.appendDir(fname)+".nii");//sets up on-disk writing with default writing version
+ outputFile.setWritingFile((logger.appendDir(fname)+".nii").c_str());//sets up on-disk writing with default writing version
cifti::CiftiXML xml(inputCifti.getCiftiXML());
cifti::CiftiScalarsMap scalarsMap;
std::vector<char> foo = xml.writeXMLToVector();
--
2.18.1