99 lines
3.9 KiB
Diff
99 lines
3.9 KiB
Diff
--- a/bidsschematools/tests/conftest.py
|
|
+++ b/bidsschematools/tests/conftest.py
|
|
@@ -35,29 +35,38 @@ BIDS_ERROR_SELECTION = [
|
|
def get_gitrepo_fixture(url, whitelist):
|
|
@pytest.fixture(scope="session")
|
|
def fixture():
|
|
- with tempfile.TemporaryDirectory() as path:
|
|
- assert os.path.exists(path)
|
|
- lgr.debug("Cloning %r into %r", url, path)
|
|
- runout = run(
|
|
- [
|
|
- "git",
|
|
- "clone",
|
|
- "--depth=1",
|
|
- "--filter=blob:none",
|
|
- "--sparse",
|
|
- url,
|
|
- path,
|
|
- ],
|
|
- capture_output=True,
|
|
- )
|
|
- if runout.returncode:
|
|
- raise RuntimeError(f"Failed to clone {url} into {path}")
|
|
- # cwd specification is VERY important, not only to achieve the correct
|
|
- # effects, but also to avoid dropping files from your repository if you
|
|
- # were to run `git sparse-checkout` inside the software repo.
|
|
- _ = run(["git", "sparse-checkout", "init", "--cone"], cwd=path)
|
|
- _ = run(["git", "sparse-checkout", "set"] + whitelist, cwd=path)
|
|
- yield path
|
|
+ archive_name = url.rsplit("/",1)[-1]
|
|
+ testdata_archive = os.path.join(os.getcwd(),"testdata",archive_name)
|
|
+ if os.path.isdir(testdata_archive):
|
|
+ lgr.info("Found static testdata archive under `%s`. "
|
|
+ "Not downloading latest data from version control.", testdata_archive)
|
|
+ yield testdata_archive
|
|
+ else:
|
|
+ lgr.info("No static testdata available under `%s`. "
|
|
+ "Attempting to fetch live data from version control.", testdata_archive)
|
|
+ with tempfile.TemporaryDirectory() as path:
|
|
+ assert os.path.exists(path)
|
|
+ lgr.debug("Cloning %r into %r", url, path)
|
|
+ runout = run(
|
|
+ [
|
|
+ "git",
|
|
+ "clone",
|
|
+ "--depth=1",
|
|
+ "--filter=blob:none",
|
|
+ "--sparse",
|
|
+ url,
|
|
+ path,
|
|
+ ],
|
|
+ capture_output=True,
|
|
+ )
|
|
+ if runout.returncode:
|
|
+ raise RuntimeError(f"Failed to clone {url} into {path}")
|
|
+ # cwd specification is VERY important, not only to achieve the correct
|
|
+ # effects, but also to avoid dropping files from your repository if you
|
|
+ # were to run `git sparse-checkout` inside the software repo.
|
|
+ _ = run(["git", "sparse-checkout", "init", "--cone"], cwd=path)
|
|
+ _ = run(["git", "sparse-checkout", "set"] + whitelist, cwd=path)
|
|
+ yield path
|
|
|
|
return fixture
|
|
|
|
|
|
--- a/bidsschematools/tests/test_validator.py
|
|
+++ b/bidsschematools/tests/test_validator.py
|
|
@@ -377,7 +377,6 @@ def test_bids_datasets(bids_examples, tmp_path, dataset):
|
|
result = validate_bids(
|
|
target,
|
|
schema_version=schema_path,
|
|
- report_path=True,
|
|
)
|
|
# Have all files been validated?
|
|
assert len(result["path_tracking"]) == 0
|
|
--- a/bidsschematools/validator.py
|
|
+++ b/bidsschematools/validator.py
|
|
@@ -451,7 +451,7 @@ def validate_all(
|
|
|
|
def write_report(
|
|
validation_result,
|
|
- report_path="/var/tmp/bids-validator/report_{datetime}-{pid}.log",
|
|
+ report_path="~/.cache/bidsschematools/validator-report_{datetime}-{pid}.log",
|
|
datetime_format="%Y%m%d%H%M%SZ",
|
|
):
|
|
"""Write a human-readable report based on the validation result.
|
|
@@ -481,8 +481,9 @@ def write_report(
|
|
pid=os.getpid(),
|
|
)
|
|
report_path = os.path.abspath(os.path.expanduser(report_path))
|
|
+ report_dir = os.path.dirname(report_path)
|
|
try:
|
|
- os.makedirs(os.path.dirname(report_path))
|
|
+ os.makedirs(report_dir)
|
|
except OSError:
|
|
pass
|
|
|
|
|