56 lines
1.4 KiB
Bash
56 lines
1.4 KiB
Bash
# Copyright 2021 Gentoo Authors
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=8
|
|
|
|
PYTHON_COMPAT=( python3_{8..9} )
|
|
# 3.10 missing on numba and spyking-circus
|
|
inherit distutils-r1
|
|
|
|
DESCRIPTION="A Python-based module for creating flexible and robust spike sorting pipelines."
|
|
HOMEPAGE="https://github.com/SpikeInterface/spikeinterface"
|
|
SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
|
|
|
|
LICENSE="MIT"
|
|
SLOT="0"
|
|
KEYWORDS="~amd64"
|
|
IUSE="test"
|
|
RESTRICT="test"
|
|
# Tests fail, checking with upstream
|
|
# https://github.com/SpikeInterface/spikeinterface/issues/307
|
|
|
|
DEPEND="
|
|
${RDEPEND}
|
|
test? (
|
|
dev-python/loky[${PYTHON_USEDEP}]
|
|
dev-python/numba[${PYTHON_USEDEP}]
|
|
dev-python/tridesclous[${PYTHON_USEDEP}]
|
|
sci-libs/spyking-circus[${PYTHON_USEDEP}]
|
|
dev-vcs/datalad
|
|
)
|
|
"
|
|
RDEPEND="
|
|
dev-python/joblib[${PYTHON_USEDEP}]
|
|
dev-python/neo[${PYTHON_USEDEP}]
|
|
dev-python/numpy[${PYTHON_USEDEP}]
|
|
dev-python/probeinterface[${PYTHON_USEDEP}]
|
|
dev-python/tqdm[${PYTHON_USEDEP}]
|
|
"
|
|
# also needs:
|
|
# dev-python/PyQt5
|
|
# hbdscan
|
|
# shybird
|
|
# herdingspikes
|
|
# might also need:
|
|
# dev-vcs/git-annex
|
|
# dev-python/matplotlib[${PYTHON_USEDEP}]
|
|
# sci-libs/scikit-learn[${PYTHON_USEDEP}]
|
|
# dev-python/networkx[${PYTHON_USEDEP}]
|
|
# dev-python/pybind11[${PYTHON_USEDEP}]
|
|
# dev-python/pillow[${PYTHON_USEDEP}]
|
|
# dev-python/pandas[${PYTHON_USEDEP}]
|
|
# dev-python/h5py[${PYTHON_USEDEP}]
|
|
BDEPEND=""
|
|
|
|
distutils_enable_tests pytest
|