197 lines
6.3 KiB
Bash
197 lines
6.3 KiB
Bash
# Copyright 1999-2020 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
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inherit toolchain-funcs cmake python-single-r1
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MY_PN="InsightToolkit"
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MY_P="${MY_PN}-${PV}"
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GLI_HASH="a02cbeaf28cb3d28ac66b9ac651073530eb6ab78"
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TEST_HASH="0eb202e23ae81be123b1b26cf31a9ba743824700"
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#declare -a GIT_TEST_HASHES=(
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# "a5e11ea71164ff78c65fcf259db01ea5db981a9d868e60045ff2bffca92984df1174bf984a1076e450f0d5d69b4f0191ed1a61465c220e2c91a893b5df150c0a"
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# "bcdbb347f3704262d1f00be7179d6a0a6e68aed56c0653e8072ee5a94985c713bd229c935b1226a658af84fb7f1fffc2458c98364fc35303a2303b12f9f7ce2f"
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#)
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GLI_TEST_HASH1="a5e11ea71164ff78c65fcf259db01ea5db981a9d868e60045ff2bffca92984df1174bf984a1076e450f0d5d69b4f0191ed1a61465c220e2c91a893b5df150c0a"
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GLI_TEST_HASH2="bcdbb347f3704262d1f00be7179d6a0a6e68aed56c0653e8072ee5a94985c713bd229c935b1226a658af84fb7f1fffc2458c98364fc35303a2303b12f9f7ce2f"
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DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
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HOMEPAGE="http://www.itk.org"
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SRC_URI="
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https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz
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https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.zip -> ITKGenericLabelInterpolator-${PV}.zip
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test? (
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https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz
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https://github.com/InsightSoftwareConsortium/ITKTestingData/archive/${TEST_HASH}.tar.gz
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https://data.kitware.com/api/v1/file/hashsum/sha512/${GLI_TEST_HASH1}/download -> ${GLI_TEST_HASH1}
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https://data.kitware.com/api/v1/file/hashsum/sha512/${GLI_TEST_HASH2}/download -> ${GLI_TEST_HASH2}
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)
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"
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#https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.zip -> ITKGenericLabelInterpolator-${PV}.zip
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#https://data.kitware.com/api/v1/folder/${GLI_TEST_HASH}/download -> ITKGenericLabelInterpolator_test-${PV}.zip
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RESTRICT="primaryuri"
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LICENSE="Apache-2.0"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="debug doc examples fftw python review test vtkglue"
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# python will not work, this is a know issue upstream:
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# https://github.com/InsightSoftwareConsortium/ITK/issues/1229
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# https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/issues/10
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RDEPEND="
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dev-libs/double-conversion:0=
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media-libs/openjpeg:2
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media-libs/libpng:0=
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media-libs/tiff:0=[jpeg]
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sci-libs/dcmtk:0=
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sci-libs/hdf5:0=[cxx]
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sys-libs/zlib:0=
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virtual/jpeg:0=
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fftw? ( sci-libs/fftw:3.0= )
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vtkglue? ( sci-libs/vtk:0=[rendering,python?] )
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"
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DEPEND="${RDEPEND}
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sys-apps/coreutils
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python? (
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>=dev-lang/swig-2.0:0
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dev-cpp/castxml
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)
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doc? ( app-doc/doxygen )
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"
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REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
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S="${WORKDIR}/${MY_P}"
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PATCHES=(
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"${FILESDIR}"/tests.patch
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"${FILESDIR}"/${P}-downloads.patch
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)
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pkg_pretend() {
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if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
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elog "To tune ITK to make the best use of working memory you can set"
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elog " ITK_COMPUTER_MEMORY_SIZE=XX"
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elog "in make.conf, default is 1 (unit is GB)"
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fi
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if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
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elog "For Python language bindings, you can define the dimensions"
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elog "you want to create bindings for by setting"
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elog " ITK_WRAP_DIMS=X;Y;Z..."
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elog "in make.conf, default is 2;3 for 2D and 3D data"
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fi
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}
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src_prepare() {
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sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
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Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
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ln -sr ../ITKGenericLabelInterpolator-* Modules/External/ITKGenericLabelInterpolator || die
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#pwd
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#echo ${S}
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#echo ${WORKDIR}
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#die
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cmake_src_prepare
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if use test; then
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cp -rf "../ITKTestingData-${TEST_HASH}/"* ".ExternalData/" || die
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mv "../ITKTestingData-${TEST_HASH}" "${BUILD_DIR}/.ExternalData" || die
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cp "${DISTDIR}/${GLI_TEST_HASH1}" ".ExternalData/SHA512/" || die
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cp "${DISTDIR}/${GLI_TEST_HASH1}" "${BUILD_DIR}/.ExternalData/SHA512/" || die
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cp "${DISTDIR}/${GLI_TEST_HASH2}" ".ExternalData/SHA512/" || die
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cp "${DISTDIR}/${GLI_TEST_HASH2}" "${BUILD_DIR}/.ExternalData/SHA512/" || die
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fi
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#pwd
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#echo ${S}
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#echo ${WORKDIR}
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#echo ${BUILD_DIR}
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#die
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}
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src_configure() {
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local mycmakeargs=(
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-DBUILD_EXAMPLES="$(usex examples ON OFF)"
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-DBUILD_SHARED_LIBS=ON
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-DBUILD_TESTING="$(usex test ON OFF)"
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-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
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-DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData"
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-DGDCM_USE_SYSTEM_OPENJPEG=ON
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-DITK_FORBID_DOWNLOADS:BOOL=ON
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-DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
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-DITK_USE_REVIEW="$(usex review ON OFF)"
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-DITK_USE_SYSTEM_DCMTK=ON
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-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
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-DITK_USE_SYSTEM_CASTXML=ON
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-DITK_USE_SYSTEM_HDF5=ON
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-DITK_USE_SYSTEM_JPEG=ON
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-DITK_USE_SYSTEM_PNG=ON
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-DITK_USE_SYSTEM_SWIG=ON
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-DITK_USE_SYSTEM_TIFF=ON
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-DITK_USE_SYSTEM_ZLIB=ON
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-DITK_USE_KWSTYLE=OFF
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-DITK_BUILD_DEFAULT_MODULES=ON
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-DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
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-DModule_GenericLabelInterpolator:BOOL=ON
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-DModule_ITKReview:BOOL=ON
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-DWRAP_ITK_JAVA=OFF
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-DWRAP_ITK_TCL=OFF
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)
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if use fftw; then
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mycmakeargs+=(
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-DUSE_FFTWD=ON
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-DUSE_FFTWF=ON
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-DUSE_SYSTEM_FFTW=ON
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-DITK_WRAP_double=ON
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-DITK_WRAP_vector_double=ON
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-DITK_WRAP_covariant_vector_double=ON
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-DITK_WRAP_complex_double=ON
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)
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fi
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if use vtkglue; then
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mycmakeargs+=(
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-DModule_ITKVtkGlue=ON
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)
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fi
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if use python; then
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mycmakeargs+=(
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-DITK_WRAP_PYTHON=ON
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-DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
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)
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else
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mycmakeargs+=(
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-DITK_WRAP_PYTHON=OFF
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)
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fi
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cmake_src_configure
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}
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src_install() {
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cmake_src_install
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if use examples; then
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insinto /usr/share/doc/${PF}/examples
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docompress -x /usr/share/doc/${PF}/examples
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doins -r "${S}"/Examples/*
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fi
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echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
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local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
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if use python; then
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echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
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ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
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fi
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echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
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doenvd "${T}"/40${PN}
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if use doc; then
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insinto /usr/share/doc/${PF}/api-docs
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cd "${WORKDIR}"/html
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rm *.md5 || die "Failed to remove superfluous hashes"
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einfo "Installing API docs. This may take some time."
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insinto /usr/share/doc/${PF}/api-docs
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doins -r *
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fi
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}
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