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TheChymera-overlay/sci-biology/fsl/files/fsl-5.0.4-setup.patch
Horea Christian ed14ef2be5
sci-biology/fsl: attempt at version bump 6.0.2
Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Horea Christian <chr@chymera.eu>
2019-11-06 23:30:23 +01:00

111 lines
3.4 KiB
Diff

--- extras/build.orig 2013-10-18 21:37:53.533939550 +1300
+++ extras/build 2013-10-18 21:40:42.283158471 +1300
@@ -41,7 +41,7 @@
errorprojs="" ; export errorprojs ;
-PROJECTS="tcl tk zlib libpng libiconv libgd libgdc libprob libcprob newmat cprob newran cephes fftw"
+PROJECTS="libgdc libprob libcprob newmat cprob newran cephes"
for projname in $PROJECTS; do
--- build.orig 2013-10-18 22:24:22.312777248 +1300
+++ build 2013-10-18 22:24:59.161835107 +1300
@@ -11,8 +11,7 @@
ifit load_varian load_dicom misc_scripts fdt first possum sgeutils flameo oxford_asl relax qboot topup ptx2 lesions eddy dwssfp";
fi
-echo "Building projects - see build.log file for progress..."
-./config/common/buildproj $PROJECTS > ./build.log 2>&1
-echo "Finished build : end of log file shows ..."
-tail -10 build.log
+echo "Building projects"
+./config/common/buildproj $PROJECTS
+echo "Finished build"
--- config/common/buildproj.orig 2013-10-18 22:28:40.683182435 +1300
+++ config/common/buildproj 2013-10-18 22:29:09.612227825 +1300
@@ -11,10 +11,10 @@
fi
PROJECTS="$@" ; export PROJECTS ;
-FSLDIR=`pwd`
+#FSLDIR=`pwd`
FSLDEVDIR=${FSLDIR}
FSLCONFDIR=${FSLDIR}/config
-FSLMACHTYPE=`${FSLDIR}/etc/fslconf/fslmachtype.sh`
+#FSLMACHTYPE=`${FSLDIR}/etc/fslconf/fslmachtype.sh`
export FSLDIR FSLDEVDIR FSLCONFDIR FSLMACHTYPE
buildmessages="" ; export buildmessages ;
--- config/generic/systemvars.mk.orig 2007-07-13 23:00:20.000000000 +1200
+++ config/generic/systemvars.mk 2013-10-18 23:13:06.472693414 +1300
@@ -4,20 +4,20 @@
# System dependent commands (NB: the first two are the most platform dependent)
-INSTALL = ginstall -p
-RANLIB = ranlib
+INSTALL = install -p
+RANLIB = @@GENTOO_RANLIB@@
RM = /bin/rm
CP = /bin/cp
MV = /bin/mv
CHMOD = /bin/chmod
MKDIR = /bin/mkdir
-TCLSH = ${FSLDIR}/bin/fsltclsh
+TCLSH = tclsh
# Compiler dependent variables
-CC = gcc
-CXX = c++
+CC = @@GENTOO_CC@@
+CXX = @@GENTOO_CXX@@
CSTATICFLAGS = -static
CXXSTATICFLAGS = -static
@@ -25,7 +25,7 @@
DEPENDFLAGS = -MM
-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS}
+OPTFLAGS =
MACHDBGFLAGS =
GNU_ANSI_FLAGS = -Wall -ansi -pedantic
SGI_ANSI_FLAGS = -ansi -fullwarn
--- config/common/vars.mk.orig 2013-10-18 23:39:26.384029157 +1300
+++ config/common/vars.mk 2013-10-18 23:40:49.489145387 +1300
@@ -24,15 +24,15 @@
USRCFLAGS =
USRCXXFLAGS =
-LDFLAGS = ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR}
+LDFLAGS = ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR} ${USERLDFLAGS}
-AccumulatedIncFlags = ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR}
+AccumulatedIncFlags = ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR} ${CPPFLAGS}
CFLAGS = ${ANSI_FLAGS} ${DBGFLAGS} ${USEDCSTATICFLAGS} ${USRCFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \
- ${AccumulatedIncFlags}
+ ${AccumulatedIncFlags} ${USERCFLAGS}
CXXFLAGS = ${ANSI_FLAGS} ${DBGFLAGS} ${USEDCXXSTATICFLAGS} ${USRCXXFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \
- ${AccumulatedIncFlags}
+ ${AccumulatedIncFlags} ${USERCXXFLAGS}
HFILES = *.h
AFILES = *.a
--- config/common/buildproj.orig 2013-10-19 23:27:10.477238469 +1300
+++ config/common/buildproj 2013-10-19 23:28:32.207370622 +1300
@@ -66,7 +66,7 @@
if [ -x fslconfig ] ; then
./fslconfig ;
fi
- if ${MAKE} -k ${MAKEOPTIONS} ; then
+ if ${MAKE} ${MAKEOPTIONS} ${MAKEOPTS} ; then
if ${MAKE} install ; then
installok=true;
# Clean up after ourselves