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TheChymera-overlay/dev-python/spikeextractors/spikeextractors-0.9.7.ebuild
Horea Christian ef6f025872
dev-python/spikeextractors: new package (DANDI ephys stack)
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>
2021-10-14 17:27:45 -04:00

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# Copyright 2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{8..9} )
# dev-python/hdf5storage is holding 3.10 back
inherit distutils-r1
DESCRIPTION="Extract, convert, and interface with extracellular data, now in spikeinterfaces"
HOMEPAGE="https://github.com/SpikeInterface/spikeextractors"
SRC_URI="https://github.com/SpikeInterface/spikeextractors/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
# dev-python/hdf5storage, datalad, and neo hold back ~x86
IUSE="test"
RESTRICT="!test? ( test )"
DEPEND=""
RDEPEND="
dev-python/h5py[${PYTHON_USEDEP}]
dev-python/hdf5storage[${PYTHON_USEDEP}]
dev-python/joblib[${PYTHON_USEDEP}]
dev-python/loky[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/neo[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pandas[${PYTHON_USEDEP}]
dev-python/pynwb[${PYTHON_USEDEP}]
dev-python/pyyaml[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/tqdm[${PYTHON_USEDEP}]
dev-vcs/datalad
"
# also needs
# pyintan
# pyopenephys
# nixio
# shybird
# mtscomp
# exdir
# sonpy
# pyyaml and shybird might not really be needed
BDEPEND=""
PATCHES=(
"${FILESDIR}/${PN}-0.9.7-no-test-install.patch"
)
distutils_enable_tests pytest
src_install() {
pwd
ls -lah
rm -rf tests/ || die "Could not remove tests directory incorrectly selected by package for install."
ls -lah
distutils-r1_src_install
}