61 lines
1.6 KiB
Bash
61 lines
1.6 KiB
Bash
# Copyright 2021-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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P_HASH="924e41a917f38222f0b8c51ba5bdff13485b8a03"
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PYTHON_COMPAT=( python3_{10..11} )
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DISTUTILS_USE_PEP517=setuptools
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inherit distutils-r1
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DESCRIPTION="Create NWB files from proprietary formats."
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HOMEPAGE="https://github.com/catalystneuro/neuroconv"
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SRC_URI="https://github.com/catalystneuro/neuroconv/archive/${P_HASH}.tar.gz -> ${P}.gh.tar.gz"
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LICENSE="BSD"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="+ecephys +icephys +ophys"
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RDEPEND="
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/hdmf[${PYTHON_USEDEP}]
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dev-python/jsonschema[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/pandas[${PYTHON_USEDEP}]
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dev-python/psutil[${PYTHON_USEDEP}]
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dev-python/pynwb[${PYTHON_USEDEP}]
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dev-python/pyyaml[${PYTHON_USEDEP}]
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dev-python/scipy[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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dev-vcs/dandi-cli[${PYTHON_USEDEP}]
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ecephys? (
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dev-python/spikeinterface[${PYTHON_USEDEP}]
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)
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icephys? (
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dev-python/neo[${PYTHON_USEDEP}]
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)
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ophys? (
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sci-biology/roiextractors[${PYTHON_USEDEP}]
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)
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"
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BDEPEND="
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test? (
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dev-python/parameterized[${PYTHON_USEDEP}]
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)
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"
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S="${WORKDIR}/${PN}-${P_HASH}"
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distutils_enable_tests pytest
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python_test() {
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# Additional tests require complex data getting infrastructure, ophys tests still have issues:
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# https://github.com/catalystneuro/neuroconv/issues/305
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local my_tests=( "tests/test_minimal" )
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use ecephys && my_tests+=( "tests/test_ecephys" )
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#use ophys && my_tests+=( "tests/test_ophys" )
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epytest ${my_tests[*]// /|}
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}
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