150 lines
3.8 KiB
Bash
150 lines
3.8 KiB
Bash
# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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#CMAKE_MAKEFILE_GENERATOR="emake"
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PYTHON_COMPAT=( python3_{10..11} )
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inherit cmake distutils-r1 git-r3 ninja-utils
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#inherit cmake-multilib distutils-r1 git-r3 ninja-utils
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#inherit cmake distutils-r1 git-r3 multilib ninja-utils
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GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
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#NIFTI_HASH="65f801b9c2f1f15f4de4a19d45e6595c25765632"
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NIFTI_HASH="da476fd27f46098f37f5c9c4c1baee01e559572c"
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#GIFTI_HASH="5eae81ba1e87ef3553df3b6ba585f12dc81a0030"
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GIFTI_HASH="d3e873d8539d9b469daf7db04093da1d7e73d4f7"
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="
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https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz
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"
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#https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz
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EGIT_REPO_URI="https://github.com/TheChymera/afni.git"
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EGIT_BRANCH="packaging"
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SLOT="0"
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LICENSE="GPL-3+"
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KEYWORDS=""
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IUSE="test whirlgif"
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RESTRICT="!test? ( test )"
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RDEPEND="
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dev-libs/glib:2
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dev-libs/libf2c
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dev-libs/expat
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dev-util/ninja
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media-libs/freeglut
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media-libs/glu
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media-libs/netpbm
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media-libs/qhull
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media-video/mpeg-tools
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sci-libs/gsl
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sci-libs/gts
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sys-devel/llvm:*
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sys-libs/libomp
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dev-libs/libpthread-stubs
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virtual/jpeg-compat:62
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x11-libs/libGLw
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x11-libs/libXft
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x11-libs/libXi
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x11-libs/libXmu
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x11-libs/libXpm
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x11-libs/libXt
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x11-libs/motif[-static-libs]
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"
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DEPEND="
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${RDEPEND}
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app-shells/tcsh
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"
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# Prospectively:
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#Update jpeg-compat to virtual/jpeg:0
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# look for xmhtlm
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#tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
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src_prepare() {
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tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
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cmake_src_prepare
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default
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}
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src_configure() {
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#LDFLAGS="-L${S}/${LIBDIR} ${LDFLAGS}" econf --enable-progpath="${EPREFIX}/usr/bin"
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if use !whirlgif; then
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eapply "${FILESDIR}/${PN}-whirlgif.patch"
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fi
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export CFLAGS="-pthread ${CFLAGS}"
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export GIT_REPO_VERSION=3.0.1.1
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#export DO_NOT_USE_PIP=true
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#export EXPLICIT_AFNIPY_INSTALL=false
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#export LDFLAGS="-lpthread ${LDFLAGS}"
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#-CC="$(tc-getCC)"
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#-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}"
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#-DUSE_SYSTEM_GTS=OFF
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local mycmakeargs=(
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-DLIBDIR=/usr/$(get_libdir)
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-DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir)
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-DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir)
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-DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir)
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-DCOMP_COREBINARIES=ON
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-DUSE_SYSTEM_NIFTI=OFF
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-DUSE_SYSTEM_GIFTI=OFF
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-DUSE_SYSTEM_XMHTML=OFF
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-DUSE_SYSTEM_GTS=ON
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-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}"
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-DCOMP_GUI=ON
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-DCOMP_PLUGINS=ON
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-DUSE_OMP=ON
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-DCOMP_PYTHON=OFF
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#-DCOMP_PYTHON=ON
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#-DSTANDARD_PYTHON_INSTALL=OFF
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#-DPython_FIND_VIRTUALENV=STANDARD
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#-DPython_FIND_STRATEGY=LOCATION
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-DUSE_SYSTEM_F2C=ON
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)
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#-DBUILD_SHARED_LIBS=OFF
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tc-export CC
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cmake_src_configure
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#python_foreach_impl cmake_src_configure
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#python_foreach_impl python_optimize
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}
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src_compile() {
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#python_foreach_impl cmake_src_compile
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cmake_src_compile
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pushd src/python_scripts
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distutils-r1_src_compile
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popd
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#cmake_src_compile
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#cd ../afni-9999_build
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#default
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#eninja || die
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}
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#/work/afni-9999/nifti_clib-65f801b9c2f1f15f4de4a19d45e6595c25765632
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src_install() {
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#python_foreach_impl cmake_src_install
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#python_foreach_impl python_optimize
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cmake_src_install
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pushd src/python_scripts
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distutils-r1_src_install
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popd
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#cd ../afni-9999_build
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#DESTDIR=${D} eninja install
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# File collision, upstream confirmation here:
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# https://github.com/afni/afni/issues/558#issuecomment-1887693900
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cd ${D}
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#pwd
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#ls -lah
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#exit
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rm usr/bin/mpeg_encode
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}
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