From 5a5ab3c80eaaea1fe9a43659e2ea5b773b587bb0 Mon Sep 17 00:00:00 2001
From: François Bissey <frp.bissey@gmail.com>
Date: Mon, 20 Jan 2020 11:51:52 +1300
Subject: [PATCH] Because we use qstrings in ciftilib, calls to ciftilib file
 function have to be made into compatible c strings.

---
 src/flameo/gsa.cc      | 4 ++--
 src/melodic/meldata.cc | 2 +-
 src/melodic/meldata.h  | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/flameo/gsa.cc b/src/flameo/gsa.cc
index 70f8f385..16167abe 100644
--- a/src/flameo/gsa.cc
+++ b/src/flameo/gsa.cc
@@ -74,7 +74,7 @@ namespace GSA {
     sourceType=mode;
     if ( sourceType.compare("CIFTI") == 0 ) {
       cifti::CiftiFile inputCifti;
-      inputCifti.openFile(make_basename(filename)+".nii");
+      inputCifti.openFile((make_basename(filename)+".nii").c_str());
       ciftiExemplar=inputCifti.getCiftiXML();
       cerr << "ndim " << ciftiExemplar.getNumberOfDimensions() << endl;
       cerr << "type1 " << ciftiExemplar.getMappingType(0) << endl;
@@ -194,7 +194,7 @@ namespace GSA {
       scalarsMap.setLength(data.Nrows());
       ciftiExemplar.setMap(0, scalarsMap);
       CiftiFile outputFile;
-      outputFile.setWritingFile(make_basename(filename)+extension+".nii");//sets up on-disk writing with default writing version
+      outputFile.setWritingFile((make_basename(filename)+extension+".nii").c_str());//sets up on-disk writing with default writing version
       outputFile.setCiftiXML(ciftiExemplar,false);	    
       vector<float> scratchRow(data.Nrows());//read/write a row at a time
       for (int64_t row=0;row<data.Ncols();row++) {	    
diff --git a/src/melodic/meldata.cc b/src/melodic/meldata.cc
index c4ad2349..1515e702 100644
--- a/src/melodic/meldata.cc
+++ b/src/melodic/meldata.cc
@@ -118,7 +118,7 @@ namespace Melodic{
     	tmpData = RawData.matrix(Mask);
 		memmsg(" after reshape ");	  
 	} else { //Read in Cifti
-	  inputCifti.openFile(fname+".nii");
+	  inputCifti.openFile((fname+".nii").c_str());
 	  const vector<int64_t>& dims = inputCifti.getDimensions();
 	  tmpData.ReSize(dims[0],dims[1]); //swapped compared to cifti
 	  vector<float> scratchRow(dims[0]);//read/write a row at a time
diff --git a/src/melodic/meldata.h b/src/melodic/meldata.h
index 49774003..f5326bdd 100644
--- a/src/melodic/meldata.h
+++ b/src/melodic/meldata.h
@@ -109,7 +109,7 @@ namespace Melodic{
 	  message("  " << logger.appendDir(fname) << endl);
 	} else { //Process CIFTI save ICs as float
 	  cifti::CiftiFile outputFile;
-	  outputFile.setWritingFile(logger.appendDir(fname)+".nii");//sets up on-disk writing with default writing version
+	  outputFile.setWritingFile((logger.appendDir(fname)+".nii").c_str());//sets up on-disk writing with default writing version
 	  cifti::CiftiXML xml(inputCifti.getCiftiXML());
 	  cifti::CiftiScalarsMap scalarsMap;
 	  std::vector<char> foo = xml.writeXMLToVector();
-- 
2.24.1