sci-biology/neuroconv: new package, add 0.2.4_p20230413

Signed-off-by: Horea Christian <chr@chymera.eu>

dev-python/subprocess-tee/subprocess-tee-0.1.6.ebuild

@@ -1,9 +1,9 @@
-# Copyright 2020 Gentoo Authors
+# Copyright 2020-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7,8,9} )
+PYTHON_COMPAT=( python3_{10..11} )
 inherit distutils-r1
 
 DESCRIPTION="An drop-in alternative to subprocess.run that captures the output 
@@ -12,19 +12,19 @@ HOMEPAGE="https://github.com/pycontribs/subprocess-tee"
 #SRC_URI="https://github.com/pycontribs/${PN}/archive/${PV}.tar.gz"
 SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
 
-LICENSE="MIT License"
+LICENSE="MIT"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test"
 RESTRICT="!test? ( test )"
 
 DEPEND="
-     test? ( 
-         dev-python/mock[${PYTHON_USEDEP}] 
-         dev-python/pytest[${PYTHON_USEDEP}] 
-         dev-python/pytest-cov[${PYTHON_USEDEP}] 
-         dev-python/pytest-xdist[${PYTHON_USEDEP}] 
-     )
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pytest-cov[${PYTHON_USEDEP}]
+		dev-python/pytest-xdist[${PYTHON_USEDEP}]
+	)
 "
 RDEPEND="${DEPEND}"
 BDEPEND=""

sci-biology/neuroconv/Manifest

@@ -0,0 +1 @@
+DIST neuroconv-0.2.4_p20230413.gh.tar.gz 912786 BLAKE2B 1552db2d3968f1c58caef3f3812087aa6307d37c253c2e4c42401fe97c3ecfe7d22835d8db6122dd0bf7ba41f101fb1be0c24d1fd29e6f9eef3d2e250c9a722a SHA512 4b5724d368e81dbfd87271eeb4b83312cce616c02dce6ac35d7a7094de973672b26437b3604b5178609d085e19817b7fbfb9fc151b165d9cde74e8059bfae0e1

sci-biology/neuroconv/metadata.xml

@@ -0,0 +1,21 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>gentoo@chymera.eu</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<use>
+		<flag name="ecephys">Extracellular electrophysiology interfaces</flag>
+		<flag name="icephys">Intracellular electrophysiology interfaces</flag>
+		<flag name="ophys">Optical physiology interfaces</flag>
+	</use>
+	<upstream>
+		<remote-id type="github">catalystneuro/roiextractors</remote-id>
+		<remote-id type="pypi">roiextractors</remote-id>
+	</upstream>
+</pkgmetadata>

sci-biology/neuroconv/neuroconv-0.2.4_p20230413.ebuild

@@ -0,0 +1,60 @@
+# Copyright 2021-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+P_HASH="924e41a917f38222f0b8c51ba5bdff13485b8a03"
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=setuptools
+inherit distutils-r1
+
+DESCRIPTION="Create NWB files from proprietary formats."
+HOMEPAGE="https://github.com/catalystneuro/neuroconv"
+SRC_URI="https://github.com/catalystneuro/neuroconv/archive/${P_HASH}.tar.gz -> ${P}.gh.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="+ecephys +icephys +ophys"
+
+RDEPEND="
+	dev-python/h5py[${PYTHON_USEDEP}]
+	dev-python/hdmf[${PYTHON_USEDEP}]
+	dev-python/jsonschema[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/psutil[${PYTHON_USEDEP}]
+	dev-python/pynwb[${PYTHON_USEDEP}]
+	dev-python/pyyaml[${PYTHON_USEDEP}]
+	dev-python/scipy[${PYTHON_USEDEP}]
+	dev-python/tqdm[${PYTHON_USEDEP}]
+	dev-vcs/dandi-cli[${PYTHON_USEDEP}]
+	ecephys? (
+		dev-python/spikeinterface[${PYTHON_USEDEP}]
+	)
+	icephys? (
+		dev-python/neo[${PYTHON_USEDEP}]
+	)
+	ophys? (
+		sci-biology/roiextractors[${PYTHON_USEDEP}]
+	)
+"
+BDEPEND="
+	test? (
+		dev-python/parameterized[${PYTHON_USEDEP}]
+	)
+"
+
+S="${WORKDIR}/${PN}-${P_HASH}"
+
+distutils_enable_tests pytest
+
+python_test() {
+	# Additional tests require complex data getting infrastructure, ophys tests still have issues:
+	# https://github.com/catalystneuro/neuroconv/issues/305
+	local my_tests=( "tests/test_minimal" )
+	use ecephys && my_tests+=( "tests/test_ecephys" )
+	#use ophys && my_tests+=( "tests/test_ophys" )
+	epytest ${my_tests[*]// /|}
+}