Merge remote-tracking branch 'refs/remotes/origin/master'
This commit is contained in:
Horea Christian
commit
fa58792ab5
@ -1,3 +1,10 @@
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*click-didyoumean-0.1.0 (01 Oct 2021)
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*click-didyoumean-0.2.0 (01 Oct 2021)
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01 Oct 2021; <chymera@gentoo.org> +click-didyoumean-0.1.0.ebuild,
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+click-didyoumean-0.2.0.ebuild, -click-didyoumean-0.0.3.ebuild:
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dev-python/click-didyoumean: version bump
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*click-didyoumean-0.0.3 (27 Sep 2021)
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27 Sep 2021; <chymera@gentoo.org> +click-didyoumean-0.0.3.ebuild,
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@ -1 +1,2 @@
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DIST click-didyoumean-0.0.3.tar.gz 4283 SHA256 ef16f88ac939242400be281d4d5a90303320111a8cc0838ce08f83094f0b1376 SHA512 6e832881817645eb8fa3a40acaab74a7f0dcc798aa984781a011b2ef78da2a4ae71ff2d58907bcbb35adbfc659727223c28c3622788eef05ecbdf758d6ac889d WHIRLPOOL 1f058188e56e2c72ae9368096f133e13141eb36c3685f7716876b405d8074dec0b0f8e8c2fb267c75ad1e69b6c81ebb98ac40a42c9a4ba832ef5d92c5d997aac
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DIST click-didyoumean-0.1.0.tar.gz 2343 SHA256 0d5d412fd670caec17e7c12d053de13c14790b196056082c83e61c5541a3c50a SHA512 5079bcab1701b05767d4b53302baa7f05b59af7f8d4644f6bdad9c4bbcb77673b535828726f401d442b5cb39f45073f75b43204199ddddf3d0ec133eb86b65b7 WHIRLPOOL 65193110e062f1c6f499c9a740b33f57fad23299c2a6d652710aa9c60c21ba591b3e42035752f089db51e18f9abb66aa4312e212f5c3bc5b91d39ae39d09f8db
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DIST click-didyoumean-0.2.0.tar.gz 2413 SHA256 00136c217f7fb2ab2999c272cfbd0c14cd2d6c7a643318a954357e2fc3ea7beb SHA512 1934423a36ef03a3603676b8424cfe619972544fc9d7165f388514d01364872b972069466aee03d696da08cd17653ef4f245dab6acc5f2aba3310da00102ff6a WHIRLPOOL 6746b14375eee12b8bdf813fd53b751a09ce219d806cbcde0926e67c8a36f7dd52954e14be04ca464421323b331e3d7aad22bc2ae2db93e98edefefc2af82b76
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@ -4,17 +4,19 @@
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EAPI=8
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PYTHON_COMPAT=( pypy3 python3_{8..10} )
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DISTUTILS_USE_SETUPTOOLS=pyproject.toml
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inherit distutils-r1
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DESCRIPTION="Enable git-like did-you-mean feature in click"
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HOMEPAGE="https://github.com/click-contrib/click-didyoumean"
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SRC_URI="https://github.com/click-contrib/click-didyoumean/archive/v${PV}.tar.gz -> ${P}.tar.gz"
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SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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RESTRICT="test"
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# Issue reported upstream: https://github.com/click-contrib/click-didyoumean/issues/11
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#RESTRICT="test"
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# Tests actually pass, but not included in archive:
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# https://github.com/click-contrib/click-didyoumean/issues/11
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DEPEND="
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dev-python/click
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"
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25
dev-python/click-didyoumean/click-didyoumean-0.2.0.ebuild
Normal file
25
dev-python/click-didyoumean/click-didyoumean-0.2.0.ebuild
Normal file
@ -0,0 +1,25 @@
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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( pypy3 python3_{8..10} )
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inherit distutils-r1
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DESCRIPTION="Enable git-like did-you-mean feature in click"
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HOMEPAGE="https://github.com/click-contrib/click-didyoumean"
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SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
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#SRC_URI="https://github.com/click-contrib/click-didyoumean/archive/v${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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#RESTRICT="test"
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# Tests actually pass, but not included in archive:
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# https://github.com/click-contrib/click-didyoumean/issues/11
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DEPEND="
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dev-python/click
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"
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RDEPEND="${DEPEND}"
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distutils_enable_tests pytest
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@ -1,3 +1,6 @@
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01 Oct 2021; <chymera@gentoo.org> pynwb-2.0.0.ebuild:
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dev-python/pynwb: requiring ROS3 support on hdf5
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*keyrings_alt-4.1.0 (24 Sep 2021)
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24 Sep 2021; <chymera@gentoo.org> +keyrings_alt-4.1.0.ebuild, +metadata.xml:
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@ -15,6 +15,7 @@ LICENSE="BSD"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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sci-libs/hdf5[ros3]
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dev-python/hdmf[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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6
sci-libs/hdf5/ChangeLog
Normal file
6
sci-libs/hdf5/ChangeLog
Normal file
@ -0,0 +1,6 @@
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*hdf5-1.12.1 (01 Oct 2021)
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01 Oct 2021; <chymera@gentoo.org> +files/hdf5-1.12.1-cmake_installdirs.patch,
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+hdf5-1.12.1.ebuild, +metadata.xml:
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sci-libs/hdf5: added ROS3 support (DANDI stack) Pending:
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https://github.com/gentoo/gentoo/pull/22455
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1
sci-libs/hdf5/Manifest
Normal file
1
sci-libs/hdf5/Manifest
Normal file
@ -0,0 +1 @@
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DIST hdf5-1.12.1.tar.bz2 9724309 SHA256 aaf9f532b3eda83d3d3adc9f8b40a9b763152218fa45349c3bc77502ca1f8f1c SHA512 158a067ee284ccb9e2c4db12e9d37cf187d90d9ef1bed7a6303e2c3a2fd216d7b13a46c5f46018b097511281c4246156b6f917633ca88872f10f0ad04be285fd WHIRLPOOL 1fa4d86b495652d48a662a955a8d0b384d6d996f83a86e8f23e6f3597fa5795294b10302913a771250ebc1dbc5b5a5619268a549cba594b75bd5d7bc9cad52c3
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103
sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch
Normal file
103
sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch
Normal file
@ -0,0 +1,103 @@
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--- a/c++/src/CMakeLists.txt
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+++ b/c++/src/CMakeLists.txt
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@@ -180,8 +180,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}")
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set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -46,6 +46,13 @@
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endif()
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endif ()
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+include (GNUInstallDirs)
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+set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}")
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+set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}")
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+set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}")
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+set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}")
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+set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}")
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+
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#-----------------------------------------------------------------------------
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# Instructions for use : Sub-Project Build
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#
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--- a/fortran/src/CMakeLists.txt
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+++ b/fortran/src/CMakeLists.txt
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@@ -537,8 +537,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}")
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set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
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--- a/hl/c++/src/CMakeLists.txt
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+++ b/hl/c++/src/CMakeLists.txt
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@@ -91,8 +91,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}")
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set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
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--- a/hl/fortran/src/CMakeLists.txt
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+++ b/hl/fortran/src/CMakeLists.txt
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@@ -324,8 +324,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}")
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set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
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--- a/hl/src/CMakeLists.txt
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+++ b/hl/src/CMakeLists.txt
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@@ -123,8 +123,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}")
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set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
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--- a/src/CMakeLists.txt
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+++ b/src/CMakeLists.txt
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@@ -1311,8 +1311,8 @@
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#-----------------------------------------------------------------------------
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set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
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set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
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-set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
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||||
-set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
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+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
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+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
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||||
set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}")
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||||
set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
|
||||
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||||
@@ -1419,7 +1419,7 @@
|
||||
# )
|
||||
install (
|
||||
DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html
|
||||
- DESTINATION ${HDF5_INSTALL_DATA_DIR}
|
||||
+ DESTINATION ${HDF5_INSTALL_DOC_DIR}
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||||
COMPONENT Documents
|
||||
)
|
||||
|
||||
123
sci-libs/hdf5/hdf5-1.12.1.ebuild
Normal file
123
sci-libs/hdf5/hdf5-1.12.1.ebuild
Normal file
@ -0,0 +1,123 @@
|
||||
# Copyright 1999-2021 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
FORTRAN_NEEDED="fortran"
|
||||
|
||||
inherit cmake flag-o-matic fortran-2
|
||||
|
||||
MY_P="${PN}-${PV/_p/-patch}"
|
||||
MAJOR_P="${PN}-$(ver_cut 1-2)"
|
||||
|
||||
DESCRIPTION="General purpose library and file format for storing scientific data"
|
||||
HOMEPAGE="https://www.hdfgroup.org/HDF5/"
|
||||
SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
|
||||
|
||||
LICENSE="NCSA-HDF"
|
||||
SLOT="0/${PV%%_p*}"
|
||||
KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
|
||||
IUSE="cxx debug doc examples fortran +hl mpi ros3 szip test threads unsupported zlib"
|
||||
|
||||
REQUIRED_USE="
|
||||
!unsupported? (
|
||||
mpi? ( !cxx !threads )
|
||||
threads? ( !cxx !fortran !hl )
|
||||
)"
|
||||
|
||||
RESTRICT="!test? ( test )"
|
||||
|
||||
RDEPEND="
|
||||
mpi? ( virtual/mpi[romio] )
|
||||
ros3? (
|
||||
net-misc/curl
|
||||
dev-libs/openssl
|
||||
)
|
||||
szip? ( virtual/szip )
|
||||
zlib? ( sys-libs/zlib:0= )
|
||||
"
|
||||
DEPEND="${RDEPEND}"
|
||||
BDEPEND="doc? (
|
||||
app-doc/doxygen
|
||||
virtual/latex-base
|
||||
)"
|
||||
|
||||
PATCHES=(
|
||||
"${FILESDIR}"/${PN}-1.12.1-cmake_installdirs.patch
|
||||
)
|
||||
|
||||
S="${WORKDIR}/${MY_P}"
|
||||
|
||||
pkg_setup() {
|
||||
use fortran && fortran-2_pkg_setup
|
||||
|
||||
if use mpi; then
|
||||
if has_version 'sci-libs/hdf5[-mpi]'; then
|
||||
ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
|
||||
ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
|
||||
fi
|
||||
export CC="mpicc"
|
||||
use fortran && export FC="mpif90"
|
||||
append-libs -lmpi
|
||||
elif has_version 'sci-libs/hdf5[mpi]'; then
|
||||
ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
|
||||
ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
|
||||
fi
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
local mycmakeargs=(
|
||||
-DBUILD_STATIC_LIBS=OFF
|
||||
-DFETCHCONTENT_FULLY_DISCONNECTED=ON
|
||||
-DHDF5_BUILD_EXAMPLES=OFF
|
||||
-DALLOW_UNSUPPORTED=$(usex unsupported)
|
||||
-DBUILD_TESTING=$(usex test)
|
||||
-DHDF5_BUILD_CPP_LIB=$(usex cxx)
|
||||
-DHDF5_BUILD_DOC=$(usex doc)
|
||||
-DHDF5_BUILD_FORTRAN=$(usex fortran)
|
||||
-DHDF5_BUILD_HL_LIB=$(usex hl)
|
||||
-DHDF5_ENABLE_CODESTACK=$(usex debug)
|
||||
-DHDF5_ENABLE_PARALLEL=$(usex mpi)
|
||||
-DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
|
||||
-DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
|
||||
-DHDF5_ENABLE_THREADSAFE=$(usex threads)
|
||||
-DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
|
||||
-DHDF5_ENABLE_ROS3_VFD:BOOL=$(usex ros3)
|
||||
)
|
||||
cmake_src_configure
|
||||
}
|
||||
|
||||
src_install() {
|
||||
cmake_src_install
|
||||
|
||||
# TODO: generate functioning example runners from their respective
|
||||
# .in files - as of version 1.12.1 upstream only has it implemented
|
||||
# for autoconf.
|
||||
if use examples; then
|
||||
# These are all useless outside the source tree
|
||||
rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
|
||||
rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
|
||||
|
||||
dodoc -r examples
|
||||
if use cxx; then
|
||||
docinto c++
|
||||
dodoc -r c++/examples
|
||||
fi
|
||||
if use fortran; then
|
||||
docinto fortran
|
||||
dodoc -r fortran/examples
|
||||
fi
|
||||
if use hl; then
|
||||
docinto hl
|
||||
dodoc -r hl/examples
|
||||
if use cxx; then
|
||||
docinto hl/c++
|
||||
dodoc -r hl/c++/examples
|
||||
fi
|
||||
if use fortran; then
|
||||
docinto hl/fortran
|
||||
dodoc -r hl/fortran/examples
|
||||
fi
|
||||
fi
|
||||
fi
|
||||
}
|
||||
19
sci-libs/hdf5/metadata.xml
Normal file
19
sci-libs/hdf5/metadata.xml
Normal file
@ -0,0 +1,19 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="project">
|
||||
<email>sci@gentoo.org</email>
|
||||
<name>Gentoo Science Project</name>
|
||||
</maintainer>
|
||||
<longdescription>
|
||||
HDF5 is a file format and library for storing scientific data. HDF5
|
||||
was designed and implemented to address the deficiencies of HDF4.x. It
|
||||
has a more powerful and flexible data model, supports files larger
|
||||
than 2 GB, and supports parallel I/O.
|
||||
</longdescription>
|
||||
<use>
|
||||
<flag name="hl">Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
|
||||
<flag name="ros3">Enable support for read-only S3 access (https://portal.hdfgroup.org/display/HDF5/Configuration+and+Setup+for+HDF5+Read+Only+S3+VFD)</flag>
|
||||
<flag name="unsupported">Enable unsupported combinations of configuration options</flag>
|
||||
</use>
|
||||
</pkgmetadata>
|
||||
Loading…
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Reference in New Issue
Block a user