Merge branch 'master' of github.com:TheChymera/overlay
This commit is contained in:
Horea Christian
commit
ea6c5b4920
2
app-misc/repositorg/ChangeLog
Normal file
2
app-misc/repositorg/ChangeLog
Normal file
@ -0,0 +1,2 @@
|
||||
12 May 2019; <chymera@gentoo.org> +metadata.xml, repositorg-9999.ebuild:
|
||||
app-misc/repositorg: Updated metadata and systemd USE functionality
|
||||
10
app-misc/repositorg/files/repositorg_uuid.service
Normal file
10
app-misc/repositorg/files/repositorg_uuid.service
Normal file
@ -0,0 +1,10 @@
|
||||
[Unit]
|
||||
Description=A repositorg service to check for UUID events
|
||||
After=local-fs.target
|
||||
|
||||
[Service]
|
||||
ExecStart=/usr/bin/repositorg_uuid
|
||||
User=%i
|
||||
|
||||
[Install]
|
||||
WantedBy=multi-user.target
|
||||
18
app-misc/repositorg/metadata.xml
Normal file
18
app-misc/repositorg/metadata.xml
Normal file
@ -0,0 +1,18 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="person">
|
||||
<email>chr@chymer.eu</email>
|
||||
<name>Horea Christian</name>
|
||||
</maintainer>
|
||||
<longdescription lang="en">
|
||||
Repositorg is Python module that lets you automatically reposit,
|
||||
organize, rename, and process large collections of files (e.g.
|
||||
pictures, or video). The package includes optional systemd support
|
||||
which can trigger custom repositorg scripts based on hardware
|
||||
events.
|
||||
</longdescription>
|
||||
<upstream>
|
||||
<remote-id type="github">TheChymera/repositorg</remote-id>
|
||||
</upstream>
|
||||
</pkgmetadata>
|
||||
@ -1,21 +1,40 @@
|
||||
# Copyright 1999-2015 Gentoo Foundation
|
||||
# Copyright 1999-2019 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
# $Header: $
|
||||
|
||||
EAPI=6
|
||||
EAPI=7
|
||||
|
||||
PYTHON_COMPAT=( python{2_7,3_4,3_5} )
|
||||
PYTHON_COMPAT=(python2_7 python3_{4,5,6})
|
||||
|
||||
inherit distutils-r1 git-r3 multilib
|
||||
inherit distutils-r1 git-r3 systemd
|
||||
|
||||
DESCRIPTION="Organize and rename large numbers of files"
|
||||
DESCRIPTION="Automatically reposit, organize, rename, and process large collections of files."
|
||||
HOMEPAGE="https://github.com/TheChymera/repositorg"
|
||||
SRC_URI=""
|
||||
EGIT_REPO_URI="https://github.com/TheChymera/repositorg"
|
||||
|
||||
LICENSE="GPL-3"
|
||||
SLOT="0"
|
||||
IUSE=""
|
||||
KEYWORDS=""
|
||||
IUSE="systemd"
|
||||
|
||||
DEPEND=""
|
||||
DEPEND="
|
||||
>=dev-python/argh-0.26.2
|
||||
media-libs/mutagen
|
||||
systemd? ( sys-apps/systemd )
|
||||
"
|
||||
RDEPEND="${DEPEND}"
|
||||
|
||||
python_install() {
|
||||
distutils-r1_python_install
|
||||
if use systemd; then
|
||||
systemd_newunit "${FILESDIR}/${PN}_uuid.service" "${PN}_uuid@.service"
|
||||
fi
|
||||
dobin repositorg_uuid
|
||||
}
|
||||
|
||||
src_test() {
|
||||
cd test_scripts/
|
||||
for i in *.sh; do
|
||||
./"$i" || die "Test $i failed"
|
||||
done
|
||||
}
|
||||
|
||||
56
drafts/nipype-1.1.7.ebuild
Normal file
56
drafts/nipype-1.1.7.ebuild
Normal file
@ -0,0 +1,56 @@
|
||||
# Copyright 1999-2018 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
|
||||
PYTHON_REQ_USE="threads(+),sqlite"
|
||||
|
||||
inherit distutils-r1
|
||||
|
||||
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
|
||||
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
|
||||
SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
|
||||
|
||||
LICENSE="BSD"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
IUSE="test"
|
||||
|
||||
DEPEND="
|
||||
dev-python/future[${PYTHON_USEDEP}]
|
||||
dev-python/numpy[${PYTHON_USEDEP}]
|
||||
~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
|
||||
dev-python/setuptools[${PYTHON_USEDEP}]
|
||||
sci-libs/nibabel[${PYTHON_USEDEP}]
|
||||
test? (
|
||||
dev-python/mock[${PYTHON_USEDEP}]
|
||||
dev-python/pytest[${PYTHON_USEDEP}]
|
||||
dev-python/pytest-cov[${PYTHON_USEDEP}]
|
||||
dev-python/pytest-xdist[${PYTHON_USEDEP}]
|
||||
${RDEPEND}
|
||||
)
|
||||
$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
|
||||
"
|
||||
RDEPEND="
|
||||
>=dev-python/click-6.6[${PYTHON_USEDEP}]
|
||||
dev-python/networkx[${PYTHON_USEDEP}]
|
||||
dev-python/packaging[${PYTHON_USEDEP}]
|
||||
dev-python/pydot[${PYTHON_USEDEP}]
|
||||
dev-python/pydotplus[${PYTHON_USEDEP}]
|
||||
dev-python/pygraphviz[${PYTHON_USEDEP}]
|
||||
dev-python/python-dateutil[${PYTHON_USEDEP}]
|
||||
dev-python/simplejson[${PYTHON_USEDEP}]
|
||||
dev-python/traits[${PYTHON_USEDEP}]
|
||||
sci-libs/scipy[${PYTHON_USEDEP}]
|
||||
virtual/python-funcsigs[${PYTHON_USEDEP}]
|
||||
"
|
||||
|
||||
python_test() {
|
||||
py.test -v --cov nipype\
|
||||
--cov-config .coveragerc\
|
||||
--cov-report xml:cov.xml\
|
||||
-c nipype/pytest.ini\
|
||||
--doctest-modules nipype\
|
||||
|| die
|
||||
}
|
||||
57
drafts/nipype-1.1.9.ebuild
Normal file
57
drafts/nipype-1.1.9.ebuild
Normal file
@ -0,0 +1,57 @@
|
||||
# Copyright 1999-2019 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
|
||||
PYTHON_REQ_USE="threads(+),sqlite"
|
||||
|
||||
inherit distutils-r1
|
||||
|
||||
DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
|
||||
HOMEPAGE="http://nipy.sourceforge.net/nipype/"
|
||||
SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
|
||||
|
||||
LICENSE="BSD"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
IUSE="test"
|
||||
|
||||
DEPEND="
|
||||
dev-python/future[${PYTHON_USEDEP}]
|
||||
dev-python/numpy[${PYTHON_USEDEP}]
|
||||
~dev-python/prov-1.5.0[${PYTHON_USEDEP}]
|
||||
dev-python/setuptools[${PYTHON_USEDEP}]
|
||||
sci-libs/nibabel[${PYTHON_USEDEP}]
|
||||
test? (
|
||||
dev-python/mock[${PYTHON_USEDEP}]
|
||||
dev-python/pytest[${PYTHON_USEDEP}]
|
||||
dev-python/pytest-xdist[${PYTHON_USEDEP}]
|
||||
${RDEPEND}
|
||||
)
|
||||
$(python_gen_cond_dep '
|
||||
dev-python/futures[${PYTHON_USEDEP}]
|
||||
dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
|
||||
"
|
||||
RDEPEND="
|
||||
>=dev-python/click-6.6[${PYTHON_USEDEP}]
|
||||
dev-python/networkx[${PYTHON_USEDEP}]
|
||||
dev-python/packaging[${PYTHON_USEDEP}]
|
||||
dev-python/pydot[${PYTHON_USEDEP}]
|
||||
dev-python/pydotplus[${PYTHON_USEDEP}]
|
||||
dev-python/pygraphviz[${PYTHON_USEDEP}]
|
||||
dev-python/python-dateutil[${PYTHON_USEDEP}]
|
||||
dev-python/simplejson[${PYTHON_USEDEP}]
|
||||
dev-python/traits[${PYTHON_USEDEP}]
|
||||
sci-libs/scipy[${PYTHON_USEDEP}]
|
||||
virtual/python-funcsigs[${PYTHON_USEDEP}]
|
||||
"
|
||||
|
||||
python_test() {
|
||||
py.test -v --cov nipype\
|
||||
--cov-config .coveragerc\
|
||||
--cov-report xml:cov.xml\
|
||||
-c nipype/pytest.ini\
|
||||
--doctest-modules nipype\
|
||||
|| die
|
||||
}
|
||||
1
sci-biology/psychopy/Manifest
Normal file
1
sci-biology/psychopy/Manifest
Normal file
@ -0,0 +1 @@
|
||||
DIST psychopy-3.0.7.tar.gz 17200357 SHA256 6f40e3f430abd1f3fc90d00adbbfb6deeb283c29817df6a2d84fd6b3486b6b7c SHA512 9277c87cdf0add9ef827cc2eeea7a7d2b8c85ff4ce43fd3965119912cf648a99eec8a05c0cbb4ff601d173e433ae1bd03b7b081e63a315dd3b87ff5715f144d4 WHIRLPOOL c39270d3fe49e1dae09e878ac55bbe2db7a15c2f5494c90a29dbd563b72012dd485d7ed4c8082935b9e11a3178484b54daad67e027dff2f25245b3f4833bf583
|
||||
11
sci-biology/psychopy/metadata.xml
Normal file
11
sci-biology/psychopy/metadata.xml
Normal file
@ -0,0 +1,11 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="person">
|
||||
<email>horea.christ@gmail.com</email>
|
||||
<name>Horea Christian</name>
|
||||
</maintainer>
|
||||
<upstream>
|
||||
<remote-id type="github">psychopy/psychopy</remote-id>
|
||||
</upstream>
|
||||
</pkgmetadata>
|
||||
71
sci-biology/psychopy/psychopy-3.0.7.ebuild
Normal file
71
sci-biology/psychopy/psychopy-3.0.7.ebuild
Normal file
@ -0,0 +1,71 @@
|
||||
# Copyright 1999-2019 Gentoo Foundation
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
PYTHON_COMPAT=( python{2_7,3_5,3_6,3_7} )
|
||||
PYTHON_REQ_USE="threads(+)"
|
||||
|
||||
inherit eutils gnome2-utils distutils-r1
|
||||
|
||||
DESCRIPTION="Python experimental psychology toolkit"
|
||||
HOMEPAGE="http://www.psychopy.org/"
|
||||
SRC_URI="https://github.com/psychopy/psychopy/archive/${PV}.tar.gz -> ${P}.tar.gz"
|
||||
|
||||
LICENSE="GPL-3+"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
USE="qt5"
|
||||
|
||||
DEPEND="
|
||||
dev-python/setuptools[${PYTHON_USEDEP}]
|
||||
"
|
||||
RDEPEND="
|
||||
dev-python/cffi[${PYTHON_USEDEP}]
|
||||
dev-python/future[${PYTHON_USEDEP}]
|
||||
dev-python/gevent[${PYTHON_USEDEP}]
|
||||
dev-python/matplotlib[${PYTHON_USEDEP}]
|
||||
dev-python/moviepy[${PYTHON_USEDEP}]
|
||||
dev-python/msgpack[${PYTHON_USEDEP}]
|
||||
dev-python/numpy[lapack,${PYTHON_USEDEP}]
|
||||
dev-python/openpyxl[${PYTHON_USEDEP}]
|
||||
dev-python/pandas[${PYTHON_USEDEP}]
|
||||
dev-python/pillow[${PYTHON_USEDEP}]
|
||||
dev-python/psutil[${PYTHON_USEDEP}]
|
||||
dev-python/pytables[${PYTHON_USEDEP}]
|
||||
dev-python/pyglet[${PYTHON_USEDEP}]
|
||||
dev-python/pyopengl[${PYTHON_USEDEP}]
|
||||
qt5? ( $(python_gen_cond_dep 'dev-python/PyQt5[${PYTHON_USEDEP}]' 'python3*') )
|
||||
dev-python/pyserial[${PYTHON_USEDEP}]
|
||||
dev-python/pyyaml[${PYTHON_USEDEP}]
|
||||
dev-python/pyzmq[${PYTHON_USEDEP}]
|
||||
dev-python/requests[${PYTHON_USEDEP}]
|
||||
dev-python/wxpython:*[${PYTHON_USEDEP}]
|
||||
dev-python/xlrd[${PYTHON_USEDEP}]
|
||||
dev-vcs/python-gitlab[${PYTHON_USEDEP}]
|
||||
media-libs/opencv[python,${PYTHON_USEDEP}]
|
||||
sci-libs/scipy[${PYTHON_USEDEP}]
|
||||
"
|
||||
#pyosf
|
||||
#json_tricks
|
||||
#soundfile
|
||||
#sounddevice
|
||||
#python-bidi
|
||||
#arabic_reshaper
|
||||
#gitpython
|
||||
#astunparse
|
||||
#esprima
|
||||
#freetype-py
|
||||
#pyparallel
|
||||
python_install_all() {
|
||||
distutils-r1_python_install_all
|
||||
newicon -s scalable psychopy/monitors/psychopy-icon.svg psychopy.svg
|
||||
make_desktop_entry psychopyApp.py PsychoPy psychopy
|
||||
}
|
||||
|
||||
pkg_postinst() {
|
||||
gnome2_icon_cache_update
|
||||
}
|
||||
pkg_postrm() {
|
||||
gnome2_icon_cache_update
|
||||
}
|
||||
1
sci-libs/libxc/Manifest
Normal file
1
sci-libs/libxc/Manifest
Normal file
@ -0,0 +1 @@
|
||||
DIST libxc-4.3.4.tar.gz 15602575 BLAKE2B 07d1b9be62344727b2b364ea7b6eb7abcb62a76cb5b17c3601847d0528a86d23762f17cdde383611b842b65342c81467af1896dbcf55569165e2be26aa348616 SHA512 9e364b27fe0bf903e5d08f5814130e2059a001a6ea08938221e20d87d0072d51177d0d21217a744c8f5828a7c88437dc624a9cf173a203783c96d2d681b71e82
|
||||
52
sci-libs/libxc/libxc-4.3.4.ebuild
Normal file
52
sci-libs/libxc/libxc-4.3.4.ebuild
Normal file
@ -0,0 +1,52 @@
|
||||
# Copyright 1999-2019 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit autotools fortran-2
|
||||
|
||||
DESCRIPTION="A library of exchange-correlation functionals for use in DFT"
|
||||
HOMEPAGE="http://octopus-code.org/wiki/Libxc"
|
||||
SRC_URI="http://www.tddft.org/programs/octopus/down.php?file=libxc/${PV}/${P}.tar.gz"
|
||||
|
||||
LICENSE="MPL-2.0"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86 ~amd64-linux"
|
||||
IUSE="fortran static-libs -test"
|
||||
|
||||
pkg_setup() {
|
||||
use fortran && fortran-2_pkg_setup
|
||||
}
|
||||
|
||||
src_prepare() {
|
||||
default
|
||||
eautoreconf
|
||||
}
|
||||
|
||||
src_configure() {
|
||||
econf --enable-shared \
|
||||
$(use_enable fortran) \
|
||||
$(use_enable static-libs static)
|
||||
}
|
||||
|
||||
## Upstream recommends not running the test suite because it requires
|
||||
## human expert interpretation to determine whether output is an error or
|
||||
## expected under certain circumstances. Nevertheless, experts might want the option.
|
||||
# The autotools src_test function modified not to die. Runs emake check in build directory.
|
||||
src_test() {
|
||||
debug-print-function ${FUNCNAME} "$@"
|
||||
|
||||
_check_build_dir
|
||||
pushd "${BUILD_DIR}" > /dev/null || die
|
||||
make check || ewarn "Make check failed. See above for details."
|
||||
einfo "emake check done"
|
||||
popd > /dev/null || die
|
||||
}
|
||||
|
||||
src_install() {
|
||||
default
|
||||
find "${ED%/}" -name '*.la' -type f -delete || die
|
||||
if ! use fortran; then
|
||||
rm "${ED%/}"/usr/$(get_libdir)/pkgconfig/libxcf{03,90}.pc || die
|
||||
fi
|
||||
}
|
||||
31
sci-libs/libxc/metadata.xml
Normal file
31
sci-libs/libxc/metadata.xml
Normal file
@ -0,0 +1,31 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="project">
|
||||
<email>sci@gentoo.org</email>
|
||||
<name>Gentoo Science Project</name>
|
||||
</maintainer>
|
||||
<maintainer type="person">
|
||||
<email>Hloupy.Honza@centrum.cz</email>
|
||||
<name>Honza Macháček</name>
|
||||
</maintainer>
|
||||
<longdescription lang="en">
|
||||
Libxc is a library of exchange-correlation functionals for density-functional theory.
|
||||
The aim is to provide a portable, well tested and reliable set of exchange and correlation
|
||||
functionals that can be used by all the ETSF codes and also other codes.
|
||||
|
||||
In Libxc you can find different types of functionals: LDA, GGA, hybrids, and mGGA (experimental).
|
||||
These functionals depend on local information, in the sense that the value of the potential
|
||||
at a given point depends only on the values of the density -- and the gradient of the density
|
||||
and the kinetic energy density, for the GGA and mGGA cases.
|
||||
|
||||
It can calculate the functional itself and its derivative; for some functionals,
|
||||
higher-order derivatives are available.
|
||||
|
||||
Libxc is written in C and has Fortran bindings. It is released under the MPL2 license.
|
||||
Contributions are welcome.
|
||||
</longdescription>
|
||||
<upstream>
|
||||
<doc>http://octopus-code.org/wiki/Libxc:manual</doc>
|
||||
</upstream>
|
||||
</pkgmetadata>
|
||||
28
sci-libs/nipype/metadata.xml
Normal file
28
sci-libs/nipype/metadata.xml
Normal file
@ -0,0 +1,28 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="person">
|
||||
<email>horea.christ@gmail.com</email>
|
||||
<name>Horea Christian</name>
|
||||
</maintainer>
|
||||
<maintainer type="project">
|
||||
<email>sci@gentoo.org</email>
|
||||
<name>Gentoo Science Project</name>
|
||||
</maintainer>
|
||||
<longdescription lang="en">
|
||||
Nipype, an open-source, community-developed initiative under the
|
||||
umbrella of NiPy, is a Python project that provides a uniform interface
|
||||
to existing neuroimaging software and facilitates interaction between
|
||||
these packages within a single workflow. Nipype provides an environment
|
||||
that encourages interactive exploration of algorithms from different
|
||||
packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
|
||||
eases the design of workflows within and between packages, and reduces
|
||||
the learning curve necessary to use different packages. Nipype is
|
||||
creating a collaborative platform for neuroimaging software development
|
||||
in a high-level language and addressing limitations of existing pipeline systems.
|
||||
</longdescription>
|
||||
<upstream>
|
||||
<remote-id type="github">nipy/nipype</remote-id>
|
||||
<remote-id type="sourceforge">nipy</remote-id>
|
||||
</upstream>
|
||||
</pkgmetadata>
|
||||
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Reference in New Issue
Block a user