dev-python/fslpy: new package

Ahead of inclusion in Gentoo Science

Signed-off-by: Horea Christian <horea.christ@gmail.com>
Package-Manager: Portage-2.3.50, Repoman-2.3.11

dev-python/fslpy/ChangeLog

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+*fslpy-1.11.1 (14 Oct 2018)
+
+  14 Oct 2018; Horea Christian <h.chr@mail.ru> +fslpy-1.11.1.ebuild,
+  +metadata.xml:
+  dev-python/fslpy: new package  Ahead of inclusion in Gentoo Science

dev-python/fslpy/Manifest

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+DIST fslpy-1.11.1.tar.gz 3444491 SHA256 033a1a4de6889d87e6db46a95173623272af84cce736d78244361e973de64a03 SHA512 b34640451a8bc94f7d0790095b343d2e93ead1145e5c31e2c7a831d5c08f3ae4e3f5120aa11f3dc2de734f69698d7102ce8caf80614759b15d1dd9047204aac8 WHIRLPOOL 174069b5826f3e8e5de57c8594cf68190ea808c2108e0c1f1a7f3e9451356774123ae2ea56cc4190eea95d0a72af346e4664343e4026fa274af53d729566e4c6

dev-python/fslpy/fslpy-1.11.1.ebuild

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+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 python3_{5,6} )
+
+inherit distutils-r1 virtualx
+
+DESCRIPTION="The new FSL image viewer, released with FSL 5.0.10"
+HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/tree/master"
+SRC_URI="https://github.com/pauldmccarthy/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	"
+RDEPEND="
+	dev-python/deprecation[${PYTHON_USEDEP}]
+	=dev-python/numpy-1*[${PYTHON_USEDEP}]
+	=dev-python/six-1*[${PYTHON_USEDEP}]
+	dev-python/trimesh[${PYTHON_USEDEP}]
+	dev-python/wxpython[${PYTHON_USEDEP}]
+	sci-libs/Rtree[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	=sci-libs/nibabel-2*[${PYTHON_USEDEP}]
+	"
+
+# Tests fail on Gentoo with mysterious `Fatal Python error: deallocating None`
+# https://github.com/pauldmccarthy/fslpy/issues/3
+RESTRICT="test"
+
+python_prepare_all() {
+	if use test; then
+		# Reported upstream
+		# https://github.com/pauldmccarthy/fslpy/issues/3
+		#sed -i -e \
+		#	"/def test_loadVestLutFile():/i@pytest.mark.xfail(reason='Known to fail on Gentoo')" \
+		#	tests/test_vest.py || die
+		rm tests/test_vest.py
+	fi
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	virtx pytest -m "not (dicomtest or fsltest)" --verbose || die
+}

dev-python/fslpy/metadata.xml

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+<?xml version='1.0' encoding='UTF-8'?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>horea.christ@gmail.com</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+		FSLeyes is a viewer for 3D and 4D neuroimaging data. It is intended as a
+		replacement for the much loved FSLView. FSLeyes offers similar functionality
+		to FSLView, and aims to improve and expand upon this functionality in many
+		ways.
+	</longdescription>
+</pkgmetadata>