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sci-biology/bids-schemacode: treeclean

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Signed-off-by: Horea Christian <chr@chymera.eu>
This commit is contained in:
Horea Christian 2022-08-01 21:27:43 -04:00
parent 529f16db81
commit d8221f4093
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GPG Key ID: EAA9223EE3BB378A
4 changed files with 6 additions and 72 deletions
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36
sci-biology/bids-schemacode/bids-schemacode-1.7.0_p20220526.ebuild
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@ -1,36 +0,0 @@
# Copyright 2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( python3_{8..10} )
inherit distutils-r1 git-r3
DESCRIPTION="A Python library for working with the BIDS schema"
HOMEPAGE="https://github.com/bids-standard/bids-specification"
EGIT_REPO_URI="https://github.com/bids-standard/bids-specification.git"
EGIT_COMMIT="3537e9edbc81545614d3ee605c398361099b6977"
LICENSE="CC-BY-SA-4.0"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
RDEPEND="dev-python/tabulate"
DEPEND=""
src_prepare() {
eapply "${FILESDIR}/${P}-nonetwork.patch"
cp -rfL tools/schemacode ..
rm * -rf
mv ../schemacode/* .
default
}
distutils_enable_tests pytest
python_test() {
export SCHEMACODE_TESTS_NONETWORK=1
epytest
}

19
sci-biology/bids-schemacode/files/bids-schemacode-1.7.0_p20220526-nonetwork.patch
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@ -1,19 +0,0 @@
--- a/tools/schemacode/schemacode/tests/test_validator.py
+++ b/tools/schemacode/schemacode/tests/test_validator.py
@@ -1,4 +1,5 @@
import os
+import pytest
def test__add_entity():
@@ -295,6 +296,10 @@ def test_write_report(tmp_path):
assert report_text == expected_report_text
+@pytest.mark.skipif(
+ os.environ.get("SCHEMACODE_TESTS_NONETWORK") is not None,
+ reason="no network",
+)
def test_bids_datasets(bids_examples, tmp_path):
from schemacode.validator import validate_bids

12
sci-biology/bids-schemacode/metadata.xml
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@ -1,12 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>chr@chymera.eu</email>
<name>Horea Christian</name>
</maintainer>
<maintainer type="project">
<email>sci@gentoo.org</email>
<name>Gentoo Science Project</name>
</maintainer>
</pkgmetadata>

11
sci-biology/bidsschematools/bidsschematools-0.3.0_pre20220801.ebuild
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@ -4,14 +4,15 @@
EAPI=8
DISTUTILS_USE_PEP517=setuptools
PYTHON_COMPAT=( python3_{8..10} )
PYTHON_COMPAT=( python3_{8..11} )
inherit distutils-r1 git-r3
MY_HASH="54e7990387166fd206cb1f4ec4eb2187b42c08b3"
inherit distutils-r1
DESCRIPTION="A Python library for working with the BIDS schema"
HOMEPAGE="https://github.com/bids-standard/bids-specification"
EGIT_REPO_URI="https://github.com/bids-standard/bids-specification.git"
EGIT_COMMIT="54e7990387166fd206cb1f4ec4eb2187b42c08b3"
SRC_URI="https://github.com/bids-standard/bids-specification/archive/${MY_HASH}.tar.gz -> ${P}.tar.gz"
LICENSE="CC-BY-SA-4.0"
SLOT="0"
@ -20,7 +21,7 @@ KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
RDEPEND="dev-python/tabulate"
DEPEND=""
S="${S}/tools/schemacode"
S="${WORKDIR}/bids-specification-${MY_HASH}/tools/schemacode"
distutils_enable_tests pytest