From d3eb2c82838f7601b9fcb8042dda1d6c238d5f7e Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Mon, 30 Mar 2020 00:50:18 -0400
Subject: [PATCH] sci-libs/nipype: tentative version bump 1.4.2

Package-Manager: Portage-2.3.96, Repoman-2.3.22
Signed-off-by: Horea Christian <chr@chymera.eu>
---
 sci-libs/nipype/ChangeLog           |  4 ++
 sci-libs/nipype/Manifest            |  1 +
 sci-libs/nipype/nipype-1.4.2.ebuild | 64 +++++++++++++++++++++++++++++
 3 files changed, 69 insertions(+)
 create mode 100644 sci-libs/nipype/ChangeLog
 create mode 100644 sci-libs/nipype/Manifest
 create mode 100644 sci-libs/nipype/nipype-1.4.2.ebuild

diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog
new file mode 100644
index 0000000..c2aefab
--- /dev/null
+++ b/sci-libs/nipype/ChangeLog
@@ -0,0 +1,4 @@
+*nipype-1.4.2 (30 Mar 2020)
+
+  30 Mar 2020;  <chymera@gentoo.org> +nipype-1.4.2.ebuild:
+  sci-libs/nipype:
diff --git a/sci-libs/nipype/Manifest b/sci-libs/nipype/Manifest
new file mode 100644
index 0000000..d35ae15
--- /dev/null
+++ b/sci-libs/nipype/Manifest
@@ -0,0 +1 @@
+DIST nipype-1.4.2.tar.gz 2823870 SHA256 935b660bfd81f773bd5291a90a921cc226f62940950c094be04f080f6c69501d SHA512 f913d1a63105ccb8392adfdba5ec52b3e5ce0c9ad145b062f6e551a811602b77a52f1f6e89d9d5ff366e9b063f0ab965cfbd6ae5f68a79e25e8970e1a864901c WHIRLPOOL 21ab8554f8d5eec5fc7d5d9e137eef24f11443b805c892cb1a3dfbd5f34030a08c39300778337eb5499b011a2049c3c2724988d2210356d0d5525f4758b33fdf
diff --git a/sci-libs/nipype/nipype-1.4.2.ebuild b/sci-libs/nipype/nipype-1.4.2.ebuild
new file mode 100644
index 0000000..8a5756a
--- /dev/null
+++ b/sci-libs/nipype/nipype-1.4.2.ebuild
@@ -0,0 +1,64 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6,7} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI="https://github.com/nipy/nipype/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+DEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/prov[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? (
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		${RDEPEND}
+		)
+"
+# Dependency disabled as upstream test configuration which requires it fails
+#dev-python/pytest-xdist[${PYTHON_USEDEP}]
+
+RDEPEND="
+	>=dev-python/click-6.6[${PYTHON_USEDEP}]
+	dev-python/filelock[${PYTHON_USEDEP}]
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pydot[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+#etelemetry and neurdflib
+
+#src_prepare() {
+#	sed -i\
+#		-e "/'pytest>=%s' % PYTEST_MIN_VERSION,/d"\
+#		-e "/'pytest-xdist',$/d"\
+#		nipype/info.py || die
+#	default
+#}
+
+python_test() {
+	pytest -vv\
+		|| die
+	# Upstream test configuration fails
+		#-c nipype/pytest.ini\
+		#--doctest-modules nipype\
+		#--cov nipype\
+		#--cov-config .coveragerc\
+		#--cov-report xml:cov.xml\
+}