diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog index a2f159a..a6e2e47 100644 --- a/sci-biology/ants/ChangeLog +++ b/sci-biology/ants/ChangeLog @@ -1,3 +1,7 @@ + 25 Nov 2019; -ants-2.3.1_p20191013.ebuild: + sci-biology/ants: migrated version bump to Gentoo Scinece https://gitweb.gent + oo.org/proj/sci.git/commit/?id=402183f38c721910fe038ed4ce04e0a98a37c584 + 17 Oct 2019; ants-9999.ebuild: sci-biology/ants: patch merged by ANTs upstream diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild deleted file mode 100644 index 5dd2c81..0000000 --- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild +++ /dev/null @@ -1,72 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" - -inherit cmake-utils git-r3 multilib - -DESCRIPTION="Advanced Normalitazion Tools for neuroimaging" -HOMEPAGE="http://stnava.github.io/ANTs/" -SRC_URI=" - test? ( - http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz - ) -" -EGIT_REPO_URI="https://github.com/stnava/ANTs.git" -EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86" -IUSE="test vtk" - -DEPEND=" - vtk? ( - ~sci-libs/itk-5.0.1[vtkglue] - sci-libs/vtk - ) - !vtk? ( ~sci-libs/itk-5.0.1 ) -" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}/${P}-logic.patch" - "${FILESDIR}/${P}-paths.patch" -) - -src_unpack() { - git-r3_src_unpack - if use test; then - mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory." - tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data." - fi -} - -src_configure() { - local mycmakeargs=( - -DUSE_SYSTEM_ITK=ON - -DITK_DIR="/usr/include/ITK-5.0/" - -DBUILD_TESTING="$(usex test ON OFF)" - -DUSE_VTK=$(usex vtk ON OFF) - -DUSE_SYSTEM_VTK=$(usex vtk ON OFF) - ) - use vtk && mycmakeargs+=( - -DVTK_DIR="/usr/include/vtk-8.1/" - ) - use test && mycmakeargs+=( - -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5" - ) - cmake-utils_src_configure -} - -src_install() { - BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build" - cmake-utils_src_install - cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found" - dobin *.sh - dodir /usr/$(get_libdir)/ants - install -t "${D}"/usr/$(get_libdir)/ants * || die - doenvd "${FILESDIR}"/99ants -}