dev-python/statsmodels: version bump ahead of Gentoo Main

Package-Manager: Portage-2.3.82, Repoman-2.3.20
Signed-off-by: Horea Christian <chr@chymera.eu>

dev-python/statsmodels/ChangeLog

@@ -0,0 +1,6 @@
+*statsmodels-0.10.1 (23 Dec 2019)
+
+  23 Dec 2019;  <chymera@gentoo.org> +files/statsmodels-0.6.1-numpy-1.10.patch,
+  +files/statsmodels-0.6.1-pandas-0.17.0.patch, +metadata.xml,
+  +statsmodels-0.10.1.ebuild:
+  dev-python/statsmodels: version bump ahead of Gentoo Main

dev-python/statsmodels/Manifest

@@ -0,0 +1 @@
+DIST statsmodels-0.10.1.tar.gz 14056607 SHA256 320659a80f916c2edf9dfbe83512d9004bb562b72eedb7d9374562038697fa10 SHA512 eebbdd02af841f66c93e3ea8998c2a74dcf785e12d95c33e0ff791e4abee932b2b76750cd9734a23e260d99f952be5392204607c42a99122e06340f61c96ae6f WHIRLPOOL 730547f525f9eac48bb057ae0dd7f5863ea688828ec71c99c9ea5eaf813efb534d979b45f8c3db8bfffd25bc3a6cb1e9f8fd9925de46572c838b310e194e55cd

dev-python/statsmodels/files/statsmodels-0.6.1-numpy-1.10.patch

@@ -0,0 +1,20 @@
+ statsmodels/tsa/ar_model.py | 6 ++----
+ 1 file changed, 2 insertions(+), 4 deletions(-)
+
+diff --git a/statsmodels/tsa/ar_model.py b/statsmodels/tsa/ar_model.py
+index f0af7ee..fe05634 100644
+--- a/statsmodels/tsa/ar_model.py
++++ b/statsmodels/tsa/ar_model.py
+@@ -256,10 +256,8 @@ class AR(tsbase.TimeSeriesModel):
+ 
+         Vpinv = np.zeros((p, p), dtype=params.dtype)
+         for i in range(1, p1):
+-            Vpinv[i-1, i-1:] = np.correlate(params0, params0[:i],
+-                                            old_behavior=False)[:-1]
+-            Vpinv[i-1, i-1:] -= np.correlate(params0[-i:], params0,
+-                                             old_behavior=False)[:-1]
++            Vpinv[i-1, i-1:] = np.correlate(params0, params0[:i])[:-1]
++            Vpinv[i-1, i-1:] -= np.correlate(params0[-i:], params0)[:-1]
+ 
+         Vpinv = Vpinv + Vpinv.T - np.diag(Vpinv.diagonal())
+         return Vpinv

dev-python/statsmodels/files/statsmodels-0.6.1-pandas-0.17.0.patch

@@ -0,0 +1,30 @@
+ setup.py                     | 2 +-
+ statsmodels/tools/testing.py | 2 +-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/setup.py b/setup.py
+index 1a7da9a..a6d1b33 100644
+--- a/setup.py
++++ b/setup.py
+@@ -134,7 +134,7 @@ def check_dependency_versions(min_versions):
+                               (spversion, min_versions['scipy']))
+ 
+     try:
+-        from pandas.version import short_version as pversion
++        from pandas import __version__ as pversion
+     except ImportError:
+         install_requires.append('pandas')
+     else:
+diff --git a/statsmodels/tools/testing.py b/statsmodels/tools/testing.py
+index 1fde1de..92e77fc 100644
+--- a/statsmodels/tools/testing.py
++++ b/statsmodels/tools/testing.py
+@@ -17,7 +17,7 @@ def strip_rc(version):
+ def is_pandas_min_version(min_version):
+     '''check whether pandas is at least min_version
+     '''
+-    from pandas.version import short_version as pversion
++    from pandas import __version__ as pversion
+     return StrictVersion(strip_rc(pversion)) >= min_version
+ 
+ 

dev-python/statsmodels/metadata.xml

@@ -0,0 +1,34 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>python@gentoo.org</email>
+    <name>Python</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci-mathematics@gentoo.org</email>
+    <name>Gentoo Mathematics Project</name>
+  </maintainer>
+  <maintainer type="person">
+    <email>horea.christ@gmail.com</email>
+    <name>Horea Christian</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>proxy-maint@gentoo.org</email>
+    <name>Proxy Maintainers</name>
+  </maintainer>
+  <longdescription lang="en">
+    statsmodels is a Python module that allows users to explore data,
+    estimate statistical models, and perform statistical tests. An
+    extensive list of descriptive statistics, statistical tests,
+    plotting functions, and result statistics are available for
+    different types of data and each estimator. Researchers across
+    fields may find that statsmodels fully meets their needs for
+    statistical computing and data analysis in Python.
+  </longdescription>
+  <upstream>
+    <remote-id type="pypi">statsmodels</remote-id>
+    <remote-id type="github">statsmodels</remote-id>
+    <remote-id type="sourceforge">statsmodels</remote-id>
+  </upstream>
+</pkgmetadata>

dev-python/statsmodels/statsmodels-0.10.1.ebuild

@@ -0,0 +1,73 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
+
+inherit distutils-r1 eutils
+
+DESCRIPTION="Statistical computations and models for use with SciPy"
+HOMEPAGE="https://www.statsmodels.org/stable/index.html"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples test"
+
+COMMON_DEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	>=dev-python/pandas-0.23.0[${PYTHON_USEDEP}]
+	dev-python/patsy[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+"
+RDEPEND="${COMMON_DEPEND}"
+DEPEND="${COMMON_DEPEND}
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	doc? (
+		dev-python/ipykernel[${PYTHON_USEDEP}]
+		dev-python/jupyter_client[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/nbconvert[${PYTHON_USEDEP}]
+		dev-python/nbformat[${PYTHON_USEDEP}]
+		dev-python/numpydoc[${PYTHON_USEDEP}]
+		dev-python/sphinx[${PYTHON_USEDEP}]
+	)
+	test? (
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/nose[${PYTHON_USEDEP}]
+		)
+"
+
+python_prepare_all() {
+	# Prevent un-needed d'loading
+	sed -e "/sphinx.ext.intersphinx/d" -i docs/source/conf.py || die
+	export VARTEXFONTS="${T}"/fonts
+	export MPLCONFIGDIR="${T}"
+	echo "backend : Agg" > "${MPLCONFIGDIR}"/matplotlibrc || die
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	use doc && esetup.py build_sphinx -b html --build-dir=docs/build
+}
+
+python_test() {
+	cd "${BUILD_DIR}" || die
+	python -c 'import statsmodels; statsmodels.test()' || die
+}
+
+python_install_all() {
+	find . -name \*LICENSE.txt -delete || die
+	use doc && HTML_DOCS=( docs/build/html/. )
+	if use examples; then
+		docompress -x /usr/share/doc/${PF}/examples
+		dodoc -r examples
+	fi
+	distutils-r1_python_install_all
+}
+
+pkg_postinst() {
+	optfeature "Plotting functionality" "dev-python/matplotlib"
+}