sci-biology/afni: migrated to Gentoo Science

https://gitweb.gentoo.org/proj/sci.git/commit/?id=b3db3a9c0d4b6e6a7c24003a12eef93e4a79c73d

sci-biology/afni/ChangeLog

@@ -1,6 +0,0 @@
-*afni-19.3.12 (25 Nov 2019)
-*afni-9999 (25 Nov 2019)
-
-  25 Nov 2019;  <chymera@gentoo.org> +afni-19.3.12.ebuild, +afni-9999.ebuild,
-  +metadata.xml:
-  sci-biology/afni: afni version bump ahead of Gentoo Science

sci-biology/afni/Manifest

@@ -1 +0,0 @@
-DIST afni-19.3.12.tar.gz 42337320 SHA256 c2181e365f319f62f292f85562fdffde47cea39028941bd66d5cac0675744c27 SHA512 c4f9303312a89a6e87285646f58223df40b07329cf155bf251a48e8e63302988f103a97363d0666ddd8e9f62f762cf0c219bfc995265b4fe1f1ff5f782025371 WHIRLPOOL cda9340a465051653f0bb6f82d1a0da282dba24ddd159c87b1b54b198dd9208486c11fd8c67367c9e94d8b4042f0298556b222fb1a54074eae1cf054cf5fc9eb

sci-biology/afni/afni-19.3.12.ebuild

@@ -1,72 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils multilib pax-utils toolchain-funcs
-
-DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
-HOMEPAGE="http://afni.nimh.nih.gov/"
-SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="dev-libs/expat
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sys-devel/llvm:*
-	virtual/jpeg:0
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXpm
-	x11-libs/motif[-static-libs]"
-
-# x11-libs/motif[static-libs] breaks the build.
-# See upstream discussion
-# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
-
-DEPEND="${RDEPEND}
-	app-shells/tcsh"
-
-S="${WORKDIR}/${PN}-AFNI_${PV}/src"
-BUILD="linux_fedora_19_64"
-BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
-
-src_prepare() {
-	find -type f -exec sed -i -e "s/-lXp //g" {} +
-	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
-	# Unbundle imcat
-	sed -e "s/ imcat / /g" \
-		-i Makefile.INCLUDE || die "Could not edit includes files."
-	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
-		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
-		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
-		-i Makefile || die "Could not edit Makefile"
-		# they provide somewhat problematic makefiles :(
-	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
-		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
-		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
-	eapply_user
-}
-
-src_compile() {
-	emake -j1 all plugins suma_exec
-}
-
-src_install() {
-	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
-	emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
-	for CONFLICT in ${BIN_CONFLICTS[@]}; do
-		rm "${ED}/usr/bin/${CONFLICT}"
-	done
-}

sci-biology/afni/afni-9999.ebuild

@@ -1,70 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit eutils multilib pax-utils git-r3 toolchain-funcs
-
-DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
-HOMEPAGE="http://afni.nimh.nih.gov/"
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/AFNI/AFNI"
-
-LICENSE="GPL-3+"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-RDEPEND="dev-libs/expat
-	media-libs/glu
-	media-libs/netpbm
-	media-libs/qhull
-	media-video/mpeg-tools
-	sci-libs/gsl
-	sys-devel/llvm:*
-	virtual/jpeg:0
-	x11-libs/libGLw
-	x11-libs/libXft
-	x11-libs/libXi
-	x11-libs/libXpm
-	x11-libs/motif[-static-libs]"
-
-# x11-libs/motif[static-libs] breaks the build.
-# See upstream discussion
-# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
-
-DEPEND="${RDEPEND}
-	app-shells/tcsh"
-
-S="${WORKDIR}/${P}/src"
-BUILD="linux_fedora_19_64"
-BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
-
-src_prepare() {
-	find -type f -exec sed -i -e "s/-lXp //g" {} +
-	cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
-	sed -e "s~CC     = /usr/bin/gcc -O2 -m64~CC     = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~CCMIN  = /usr/bin/gcc -m64~CCMIN  = $(tc-getCC) \$(CFLAGS)~" \
-		-e "s~LD     = /usr/bin/gcc~LD     = $(tc-getCC)~" \
-		-e "s~AR     = /usr/bin/ar~AR     = $(tc-getAR)~" \
-		-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
-		-i Makefile || die "Could not edit Makefile"
-		# they provide somewhat problematic makefiles :(
-	sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
-		-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
-		# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
-	find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
-	eapply_user
-}
-
-src_compile() {
-	emake -j1 all plugins suma_exec
-}
-
-src_install() {
-	emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
-	emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
-	for CONFLICT in ${BIN_CONFLICTS[@]}; do
-		rm "${ED}/usr/bin/${CONFLICT}"
-	done
-}

sci-biology/afni/metadata.xml

@@ -1,16 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-	<maintainer type="person">
-		<email>chr@chymera.eu</email>
-		<name>Horea Christian</name>
-	</maintainer>
-	<maintainer type="project">
-		<email>sci@gentoo.org</email>
-		<name>Gentoo Science Project</name>
-	</maintainer>
-	<longdescription>
-		Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying 
-		functional MRI data—a technique for mapping human brain activity.
-	</longdescription>
-</pkgmetadata>