diff --git a/dev-python/fslpy/ChangeLog b/dev-python/fslpy/ChangeLog deleted file mode 100644 index 9ea005b..0000000 --- a/dev-python/fslpy/ChangeLog +++ /dev/null @@ -1,11 +0,0 @@ -*fslpy-2.6.2 (04 Nov 2019) - - 04 Nov 2019; +files/fslpy-2.6.2-exclude_tests.patch, - +fslpy-2.6.2.ebuild, -fslpy-1.11.1.ebuild, -fslpy-1.13.3.ebuild: - dev-python/fslpy: version bump 2.6.2 ahead of Gentoo Science - -*fslpy-1.11.1 (14 Oct 2018) - - 14 Oct 2018; Horea Christian +fslpy-1.11.1.ebuild, - +metadata.xml: - dev-python/fslpy: new package Ahead of inclusion in Gentoo Science diff --git a/dev-python/fslpy/Manifest b/dev-python/fslpy/Manifest deleted file mode 100644 index 22ec1a4..0000000 --- a/dev-python/fslpy/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST fslpy-2.6.2.tar.gz 4643661 SHA256 9363f02678e7e9cb815352129ab72b6af392b22958b00bb375c57c98600bcd7f SHA512 42c48ec362dc0830486d862171e22b1d9336285f6cf12fc4735909b26802c206aaa090b8a6a1cfbd2f55fc041723a39f7544800c6e10d4b9a4a7ad41b9e12d2e WHIRLPOOL d0eccb3f834880bf964a249bbea23f39a6420babaef1baa646c5c8880709e5b56ec9fe3e607770464701f99a72d785111b88fb38abc3fa41a48547be43db8394 diff --git a/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch b/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch deleted file mode 100644 index 503cd53..0000000 --- a/dev-python/fslpy/files/fslpy-2.6.2-exclude_tests.patch +++ /dev/null @@ -1,10 +0,0 @@ ---- a/setup.py 2019-11-04 18:56:47.407791008 +0100 -+++ b/setup.py 2019-11-04 20:00:24.844224851 +0100 -@@ -29,6 +29,6 @@ - - packages = find_packages( -- exclude=('doc', 'tests', 'dist', 'build', 'fslpy.egg-info')) -+ exclude=('doc', 'tests', 'tests.*', 'dist', 'build', 'fslpy.egg-info')) - - # Figure out the current fslpy version, as defined in fsl/version.py. We - # don't want to import the fsl package, as this may cause build problems. diff --git a/dev-python/fslpy/fslpy-2.6.2.ebuild b/dev-python/fslpy/fslpy-2.6.2.ebuild deleted file mode 100644 index f816689..0000000 --- a/dev-python/fslpy/fslpy-2.6.2.ebuild +++ /dev/null @@ -1,59 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{5,6} ) - -inherit distutils-r1 virtualx - -DESCRIPTION="The FSL Python Library" -HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fslpy" -SRC_URI="https://github.com/pauldmccarthy/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" - -DEPEND=" - test? ( - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-cov[${PYTHON_USEDEP}] - ) - dev-python/setuptools[${PYTHON_USEDEP}] - " -RDEPEND=" - dev-python/deprecation[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/indexed_gzip[${PYTHON_USEDEP}] - =dev-python/numpy-1*[${PYTHON_USEDEP}] - =dev-python/six-1*[${PYTHON_USEDEP}] - dev-python/trimesh[${PYTHON_USEDEP}] - =dev-python/wxpython-4*[${PYTHON_USEDEP}] - =sci-libs/Rtree-0.8.3*[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - >=sci-libs/nibabel-2.3.1[${PYTHON_USEDEP}] - " - -# Tests fail on Gentoo with mysterious `Fatal Python error: deallocating None` -# https://github.com/pauldmccarthy/fslpy/issues/3 -#RESTRICT="test" - -#python_prepare_all() { -# if use test; then -# # Reported upstream -# # https://github.com/pauldmccarthy/fslpy/issues/3 -# #sed -i -e \ -# # "/def test_loadVestLutFile():/i@pytest.mark.xfail(reason='Known to fail on Gentoo')" \ -# # tests/test_vest.py || die -# #rm tests/test_vest.py -# fi -# distutils-r1_python_prepare_all -#} - -PATCHES=( "${FILESDIR}/${P}-exclude_tests.patch" ) - -python_test() { - virtx pytest -m "not (dicomtest or fsltest)" --verbose || die -} diff --git a/dev-python/fslpy/metadata.xml b/dev-python/fslpy/metadata.xml deleted file mode 100644 index 1e458f8..0000000 --- a/dev-python/fslpy/metadata.xml +++ /dev/null @@ -1,18 +0,0 @@ - - - - - horea.christ@gmail.com - Horea Christian - - - sci@gentoo.org - Gentoo Science Project - - - FSLeyes is a viewer for 3D and 4D neuroimaging data. It is intended as a - replacement for the much loved FSLView. FSLeyes offers similar functionality - to FSLView, and aims to improve and expand upon this functionality in many - ways. - -