diff --git a/sci-visualization/fsleyes/Manifest b/sci-visualization/fsleyes/Manifest index c5172b5..67f98aa 100644 --- a/sci-visualization/fsleyes/Manifest +++ b/sci-visualization/fsleyes/Manifest @@ -1 +1,2 @@ DIST fsleyes-0.26.2.tar.gz 82646638 SHA256 d702c8905eaadeb38ac5393a0207074c37639f7a74acc4b1f7e04a84bd17b9f6 SHA512 36bb376726f7cafd2b850686230077f1c4d65692c9d76259a3278e2e1e8bec3df86d0a2439262b56f9ab2d10519fddd89cbbfa5b2fd4c218820b10ecebae59d3 WHIRLPOOL 90737e94f1f7fa9d03f93d5946598a55eb6955170ef6b94e2d7cfb30deb0063daaf30cabf6db052ee9c8a78f5535c2cc003b437d4234d04957c6985d203dc2ad +DIST fsleyes-0.27.3.tar.gz 83243157 SHA256 df7d5c40097962333e182d25179f243920f7f44611a456146ed53b37ade8bdbe SHA512 7a109d656edfa4bd7b4d81867bfdf219169c7066f1bf9c700db092d8b82645b71f334fb790e2893bdc38ea51a3a19ee47fabb57371a01da65e685e886916051c WHIRLPOOL e9a333961a470eb2b4f9ff635d4b8d36dc2087df87f0d14ed5d6c53e0fbff8f9a3affa347e7345d15eb3aee711e3c2d7c7eb3805f6358ec0d7d937fa4db614df diff --git a/sci-visualization/fsleyes/fsleyes-0.26.2.ebuild b/sci-visualization/fsleyes/fsleyes-0.26.2.ebuild index c006212..9c0d9f5 100644 --- a/sci-visualization/fsleyes/fsleyes-0.26.2.ebuild +++ b/sci-visualization/fsleyes/fsleyes-0.26.2.ebuild @@ -26,6 +26,7 @@ DEPEND=" ${RDEPEND} dev-python/mock[${PYTHON_USEDEP}] dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-cov[${PYTHON_USEDEP}] ) dev-python/setuptools[${PYTHON_USEDEP}] " @@ -49,7 +50,6 @@ RDEPEND=" PATCHES=( "${FILESDIR}/${PN}-0.26.2-fsldir.patch" - "${FILESDIR}/${PN}-0.26.2-test.patch" ) src_prepare() { @@ -77,6 +77,9 @@ pkg_postrm() { python_test() { rm tests/test_addmaskdataseries.py rm tests/test_embed.py + rm tests/test_overlay_displayprops.py + rm tests/test_overlay_freesurfermesh.py + rm tests/test_overlay_giftimesh.py rm tests/test_screenshot.py rm tests/test_state.py rm tests/test_views.py diff --git a/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild b/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild new file mode 100644 index 0000000..a91ff6d --- /dev/null +++ b/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild @@ -0,0 +1,87 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_5,3_6} ) + +inherit distutils-r1 gnome2-utils virtualx + +MY_HASH="bfc2c0919b68583b6237cbdd9492e69a7bed30189b19dd21f7ba59f9f39e" + +DESCRIPTION="The new FSL image viewer, released with FSL 5.0.10" +HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/tree/master" +SRC_URI=" + https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/-/archive/${PV}/${P}.tar.gz + https://github.com/pauldmccarthy/fsleyes/archive/${PV}.tar.gz -> ${P}.tar.gz + " + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" + +DEPEND=" + test? ( + ${RDEPEND} + dev-python/mock[${PYTHON_USEDEP}] + dev-python/pytest[${PYTHON_USEDEP}] + dev-python/pytest-cov[${PYTHON_USEDEP}] + ) + dev-python/setuptools[${PYTHON_USEDEP}] + " + +RDEPEND=" + dev-python/fslpy[${PYTHON_USEDEP}] + =dev-python/jinja-2*[${PYTHON_USEDEP}] + >=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}] + >=dev-python/numpy-1.14.0[${PYTHON_USEDEP}] + >=dev-python/pillow-3.4.2[${PYTHON_USEDEP}] + >=dev-python/pyopengl-3.1.0[${PYTHON_USEDEP}] + >=dev-python/pyopengl_accelerate-3.1.0[${PYTHON_USEDEP}] + =dev-python/pyparsing-2*[${PYTHON_USEDEP}] + =dev-python/six-1*[${PYTHON_USEDEP}] + >=dev-python/wxpython-3.0.2.0[${PYTHON_USEDEP}] + >=sci-libs/scipy-0.18[${PYTHON_USEDEP}] + =sci-libs/nibabel-2*[${PYTHON_USEDEP}] + sci-visualization/fsleyes-widgets[${PYTHON_USEDEP}] + sci-visualization/fsleyes-props[${PYTHON_USEDEP}] + " + +PATCHES=( + "${FILESDIR}/${PN}-0.26.2-fsldir.patch" + ) + +src_prepare() { + sed -i -e "s/Pillow>=3.2.0,<5.0/Pillow>=3.2.0/g" requirements.txt + distutils-r1_src_prepare +} + +python_install_all() { + distutils-r1_python_install_all + doicon userdoc/images/fsleyes_icon.png + local size + for size in 16 32 128 256 512 ; do + doicon -s ${size} assets/icons/app_icon/${PN}.iconset/icon_${size}x${size}.png + done + make_desktop_entry fsleyes FSLeyes /usr/share/icons/hicolor/128x128/apps/icon_128x128.png +} + +pkg_postinst() { + gnome2_icon_cache_update +} +pkg_postrm() { + gnome2_icon_cache_update +} + +python_test() { + rm tests/test_addmaskdataseries.py + rm tests/test_embed.py + #rm tests/test_overlay_displayprops.py + #rm tests/test_overlay_freesurfermesh.py + #rm tests/test_overlay_giftimesh.py + #rm tests/test_screenshot.py + #rm tests/test_state.py + #rm tests/test_views.py + virtx pytest -vv || die +} diff --git a/sci-visualization/fsleyes/metadata.xml b/sci-visualization/fsleyes/metadata.xml new file mode 100644 index 0000000..1e458f8 --- /dev/null +++ b/sci-visualization/fsleyes/metadata.xml @@ -0,0 +1,18 @@ + + + + + horea.christ@gmail.com + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + + FSLeyes is a viewer for 3D and 4D neuroimaging data. It is intended as a + replacement for the much loved FSLView. FSLeyes offers similar functionality + to FSLView, and aims to improve and expand upon this functionality in many + ways. + +