From aecf905c079a2629313827f6f30632d0656c0528 Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Wed, 17 Jul 2019 17:47:00 +0200 Subject: [PATCH] Updated ebuilds --- sci-libs/itk/Manifest | 4 +- sci-libs/itk/itk-4.13.2.ebuild | 20 +++-- sci-libs/itk/itk-5.0.0.ebuild | 150 +++++++++++++++++++++++++++++++++ 3 files changed, 166 insertions(+), 8 deletions(-) create mode 100644 sci-libs/itk/itk-5.0.0.ebuild diff --git a/sci-libs/itk/Manifest b/sci-libs/itk/Manifest index f08c716..2b062be 100644 --- a/sci-libs/itk/Manifest +++ b/sci-libs/itk/Manifest @@ -1,3 +1,5 @@ +DIST InsightData-5.0.0.tar.gz 290800449 SHA256 8c29831687ee8bd75292edf1d78c7df889b099a33480f0acc504d1fea4ed010f SHA512 0a2b55971ca04040cd7b9732a66100a848437a36768902bb81a20103232fb25dc4766177a2dba1537e1888b56a7dd1dd5ec93f30273993b826453fe8c36adf14 WHIRLPOOL 6b46ed472fe152159a74443d8616d556613edb62021b2d6123f8c5fa47eb13671940c328c2856f506a31713670bae0672a790ebbcab9740cd2b3fbae03de2cb7 DIST InsightData-5.0rc01.tar.gz 290621965 SHA256 c4b6172809fd86ee623311001bdf7b79e801bddb9bbb8cb7123b2e5cc04f5c4f SHA512 0be5568b75017a4c4cbfc4a4e7b0339537cd2dc23d5d5637a95002e040b96f923851bc354f3a1447d3802444a951b62d2ef66ad2a0db0961bf2bd9f47399fd9a WHIRLPOOL 35668bb25fc4fd6db3b63683cb26d62f46467f3304998ec3ddcd93cd55c9532f9701feda6f9e9e14c9d3a695434ce8c3e68ba916b1e26e3bb53df2f8aae7836b -DIST itk-4.13.2.tar.gz 19341198 SHA256 98c2fd826e1987d797521d83031fcaa328135daf6524f7823363d66ab288c545 SHA512 78112f31feb389dbf98e2a1706c252408851a73c95912507b10f5bca5f498a5f73d77a4a6de73582b77b83d44196df4c3a7324d84002212725ff6b4aee69aa0b WHIRLPOOL a2fcfe40499af242f68effce3838f5106b73ba7f3855e6b911a066b0e13d1d89ae7f40b88f88f81dddf7a5db3b9a80899942ca0ffef13189fc67f4f211fed224 +DIST InsightToolkit-5.0.0.tar.gz 20617888 SHA256 6ef73c8972e775632e4022a3a3158eacd039f095bb660d235b0affb9a9282b38 SHA512 7cbff9e555fe0f351cb83828ef7c1a5fbd698290d53faa438b76192685ca188f7f65a506c31e7d0d637409ea19d56467b6a1177b93b9093055104f2ec031ecd8 WHIRLPOOL a5f97080f0deed2f81e2c0d3bcfc05b9b1351a444eb31072e088ce6001e8ad9573d8d9eb6cc17df874e6e08162099161188aa125559f6bbd4e26ac6c64ef9ed8 +DIST itk-4.13.2.tar.gz 19343413 SHA256 313422d9fedd94851133aad26a65ad9541b9c40099d22b5629d010603ad17f7c SHA512 86641537f804cc2d1ddf935a36e260033a53242e8286da43fd493e48cd2530e5562440a3ce2c61f491c12461b0f5e4fb855bb22a2611417ec8faaa54b97aea96 WHIRLPOOL 0198735615c296a72bd4b1016c90f15e80d7fc724af6ff1c7415512d820cf4ebd19183b514f9607b8907de57159a03c1b23b29eaf5b00bd487f8b4fe2a29940c DIST v5.0rc01.tar.gz 20944543 SHA256 fa6cd61bc39ccdc53808b9b0df5dd95d63a3c08be130e63ab0f4b77ca9594e46 SHA512 30e327708c7717bb2131911c86802c4104730d146b4263c68ae89384d3f01a6675b3abf5962af14cc7f40984cb1e8eedd911fe0f084a8deb4c79b4239b309728 WHIRLPOOL 6447eccbb17573233f750e3462dadd4c44c177613ca88520787579cc6e10ac523488e44dbf0f3e690a0cc009443b5adccdf62b588bdf6180dbda4a98b7d03cef diff --git a/sci-libs/itk/itk-4.13.2.ebuild b/sci-libs/itk/itk-4.13.2.ebuild index 047fb97..91df890 100644 --- a/sci-libs/itk/itk-4.13.2.ebuild +++ b/sci-libs/itk/itk-4.13.2.ebuild @@ -7,9 +7,14 @@ PYTHON_COMPAT=( python2_7 ) inherit eutils toolchain-funcs cmake-utils python-single-r1 +MY_HASH="3ee6f1e5c9a18235ca9ab88f7bba6056c09db56d" + DESCRIPTION="NLM Insight Segmentation and Registration Toolkit" HOMEPAGE="http://www.itk.org" -SRC_URI="https://github.com/InsightSoftwareConsortium/ITK/archive/v${PV}.tar.gz -> ${P}.tar.gz" +SRC_URI=" + https://github.com/dzenanz/ITK/archive/${MY_HASH}.tar.gz -> ${P}.tar.gz + " + #https://github.com/InsightSoftwareConsortium/ITK/archive/v${PV}.tar.gz -> ${P}.tar.gz LICENSE="Apache-2.0" SLOT="0" @@ -38,7 +43,8 @@ DEPEND="${RDEPEND} REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" -S="${WORKDIR}/${MYP}" +#S="${WORKDIR}/${MYP}" +S="${WORKDIR}/ITK-${MY_HASH}" PATCHES=( "${FILESDIR}"/nrrdio-linking.patch @@ -59,9 +65,9 @@ pkg_pretend() { } src_configure() { - sed -i \ - -e '/find_package/d' \ - Modules/ThirdParty/DoubleConversion/CMakeLists.txt || die + #sed -i \ + # -e 's/find_package(double-conversion REQUIRED)/find_package(double-conversion CONFIG REQUIRED)/g' \ + # Modules/ThirdParty/DoubleConversion/CMakeLists.txt || die local mycmakeargs=( -DBUILD_SHARED_LIBS=ON @@ -78,14 +84,14 @@ src_configure() { -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}" -DWRAP_ITK_JAVA=OFF -DWRAP_ITK_TCL=OFF - -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion" - -Ddouble-conversion_LIBRARIES="-ldouble-conversion" $(cmake-utils_use_build test TESTING) $(cmake-utils_use_build examples EXAMPLES) $(cmake-utils_use review ITK_USE_REVIEW) $(cmake-utils_use itkv3compat ITKV3_COMPATIBILITY) $(cmake-utils_use cpu_flags_x86_sse2 VNL_CONFIG_ENABLE_SSE2) ) + #-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion" + #-Ddouble-conversion_LIBRARIES="-ldouble-conversion" if use fftw; then mycmakeargs+=( -DUSE_FFTWD=ON diff --git a/sci-libs/itk/itk-5.0.0.ebuild b/sci-libs/itk/itk-5.0.0.ebuild new file mode 100644 index 0000000..b22e92d --- /dev/null +++ b/sci-libs/itk/itk-5.0.0.ebuild @@ -0,0 +1,150 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_{5,6,7} ) + +inherit eutils toolchain-funcs cmake-utils python-single-r1 + +MY_PN="InsightToolkit" +MY_P="${MY_PN}-${PV}" + +DESCRIPTION="NLM Insight Segmentation and Registration Toolkit" +HOMEPAGE="http://www.itk.org" +SRC_URI=" + https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz + test? ( https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz ) + " +RESTRICT="primaryuri" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="debug doc examples fftw python review test vtkglue" + +RDEPEND=" + dev-libs/double-conversion:0= + media-libs/openjpeg:2 + media-libs/libpng:0= + media-libs/tiff:0= + sci-libs/dcmtk:0= + sci-libs/hdf5:0=[cxx] + sys-libs/zlib:0= + virtual/jpeg:0= + fftw? ( sci-libs/fftw:3.0= ) + vtkglue? ( sci-libs/vtk:0=[python?] ) +" +DEPEND="${RDEPEND} + python? ( + >=dev-lang/swig-2.0:0 + dev-cpp/castxml + ) + doc? ( app-doc/doxygen ) +" + +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +pkg_pretend() { + if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then + elog "To tune ITK to make the best use of working memory you can set" + elog " ITK_COMPUTER_MEMORY_SIZE=XX" + elog "in make.conf, default is 1 (unit is GB)" + fi + if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then + elog "For Python language bindings, you can define the dimensions" + elog "you want to create bindings for by setting" + elog " ITK_WRAP_DIMS=X;Y;Z..." + elog "in make.conf, default is 2;3 for 2D and 3D data" + fi +} + +src_prepare() { + sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\ + Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt + default +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DITK_USE_SYSTEM_DCMTK=ON + -DGDCM_USE_SYSTEM_OPENJPEG=ON + -DITK_USE_SYSTEM_DOUBLECONVERSION=ON + -DITK_USE_SYSTEM_CASTXML=ON + -DITK_USE_SYSTEM_HDF5=ON + -DITK_USE_SYSTEM_JPEG=ON + -DITK_USE_SYSTEM_PNG=ON + -DITK_USE_SYSTEM_SWIG=ON + -DITK_USE_SYSTEM_TIFF=ON + -DITK_USE_SYSTEM_ZLIB=ON + -DITK_USE_KWSTYLE=OFF + -DITK_BUILD_DEFAULT_MODULES=ON + -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}" + -DWRAP_ITK_JAVA=OFF + -DWRAP_ITK_TCL=OFF + -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion" + -DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${MY_PV}/.ExternalData" + -DBUILD_TESTING="$(usex test ON OFF)" + -DBUILD_EXAMPLES="$(usex examples ON OFF)" + -DITK_USE_REVIEW="$(usex review ON OFF)" + -DITK_INSTALL_LIBRARY_DIR=$(get_libdir) + ) + if use fftw; then + mycmakeargs+=( + -DUSE_FFTWD=ON + -DUSE_FFTWF=ON + -DUSE_SYSTEM_FFTW=ON + -DITK_WRAP_double=ON + -DITK_WRAP_vector_double=ON + -DITK_WRAP_covariant_vector_double=ON + -DITK_WRAP_complex_double=ON + ) + fi + if use vtkglue; then + mycmakeargs+=( + -DModule_ITKVtkGlue=ON + ) + fi + if use python; then + mycmakeargs+=( + -DITK_WRAP_PYTHON=ON + -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}" + ) + else + mycmakeargs+=( + -DITK_WRAP_PYTHON=OFF + ) + fi + cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + + if use examples; then + insinto /usr/share/doc/${PF}/examples + docompress -x /usr/share/doc/${PF}/examples + doins -r "${S}"/Examples/* + fi + + echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN} + local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit" + if use python; then + echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN} + ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib" + fi + echo "LDPATH=${ldpath}" >> "${T}"/40${PN} + doenvd "${T}"/40${PN} + + if use doc; then + insinto /usr/share/doc/${PF}/api-docs + cd "${WORKDIR}"/html + rm *.md5 || die "Failed to remove superfluous hashes" + einfo "Installing API docs. This may take some time." + insinto /usr/share/doc/${PF}/api-docs + doins -r * + fi +}