dev-vcs/dandi-cli: version bump

and fixed tests

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian <chr@chymera.eu>

dev-vcs/dandi-cli/Manifest

@@ -3,3 +3,4 @@ DIST dandi-cli-0.30.3.tar.gz 175911 SHA256 ed218df35ee69f6d06fd6c70fe69226aaf6d3
 DIST dandi-cli-0.31.0.tar.gz 179090 SHA256 6bc9a46e90da1b6b11fcc1492c02223f135ce5a1f42747df8f5cb09fe6cb1c10 SHA512 5c72b0a75469c3f5762a653b454797723251b108c770ad617f814983691f5205c02302a444dc5650754597537d6dd75a3bc84d886a557243d489d738e3033981 WHIRLPOOL 2d2d1ad8e392f0ec0dd707963618cda3e524bd6efbd2240c8fec2fd5bec3ca15f47740a6b96c47f4f4ec05f4abd6fae90875b95fa272d79d42b305385fcafc35
 DIST dandi-cli-0.34.1.tar.gz 179765 SHA256 7b8ef65b49c6adb42c927018214f11a9c549ba6297373c929b551e1443ca95c0 SHA512 c6e42052a3bbce374589eea43f3cef9525f2d95b555731dc2899f432567c92ab6425a59b131f22f547b9e74a6225462e2dc50a7c3f1b707e17fb49e75d2e0d55 WHIRLPOOL 89b9aa5b6682d4ba2c0b035ea90ad5b77fc025cb7cfd474dc8d41297e3efc567c1ded27751912c0b588f87927a117984889907c60b49dda80eb26bac8be1c93b
 DIST dandi-cli-0.35.0.tar.gz 180324 SHA256 c05706225096cc2357552c822d6c8da985b553d2b0406415cc0037acac50222f SHA512 07689e678d064501ec6879eeb40389c87491cbde4321b382c5c1041b9a8228845086978629327a9b271b5ac62f4c66e4d3c32c1edffead93ec66ce4d03b96d9a WHIRLPOOL bd970e1983a49a7af547431fb2717cf706884fcc232698b548d687d4971699da49bff818a64081f8d83628f165996fa40182331f740933e87d69cffcd4d85d06
+DIST dandi-cli-0.37.0.tar.gz 212121 SHA256 4bf40a179d68ae4f0b28a5b62db6da8d14e17e9cb3b747162379cceab8055448 SHA512 fe96b760bb8526cf2670be4523121b389ede82699a8b13a9b46e4511012ab15390d9aec35b5403fa4d52dd79738a37980bcc83755df738b4039ae56eb6ca0f14 WHIRLPOOL 62a0fdc4f527bc246dd0452fd481e19bd07b146b9e118b8caa71227be78f5573649b0f55912cf54fe9606dc0de579692f94cc5a92f5c9a59a9d6c091bc3c068f

dev-vcs/dandi-cli/dandi-cli-0.34.1.ebuild

@@ -3,7 +3,9 @@
 
 EAPI=8
 
+DISTUTILS_USE_PEP517=setuptools
 PYTHON_COMPAT=( python3_{8..10} )
+
 inherit distutils-r1
 
 DESCRIPTION="DANDI command line client to facilitate common operations"
@@ -14,8 +16,6 @@ LICENSE="Apache-2.0"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test etelemetry"
-#RESTRICT="test"
-# Test fail during collection, reported upstream: https://github.com/dandi/dandi-cli/issues/774
 
 RDEPEND="
 	dev-python/appdirs[${PYTHON_USEDEP}]
@@ -40,11 +40,7 @@ RDEPEND="
 	dev-python/tenacity[${PYTHON_USEDEP}]
 	dev-python/tqdm[${PYTHON_USEDEP}]
 	dev-python/wheel[${PYTHON_USEDEP}]
-	<dev-python/jsonschema-4[${PYTHON_USEDEP}]
 "
-# Errors with newer jsonschema, though not a direct dependency, reported upstream:
-# https://github.com/dandi/dandi-cli/issues/825
-# https://github.com/python-hyper/uritemplate/issues/76
 
 DEPEND="
 	dev-python/setuptools[${PYTHON_USEDEP}]
@@ -56,6 +52,13 @@ DEPEND="
 	)
 "
 
+EPYTEST_DESELECT=(
+	"dandi/tests/test_utils.py::test_get_instance_dandi_with_api"
+	"dandi/tests/test_utils.py::test_get_instance_url"
+	"dandi/tests/test_utils.py::test_get_instance_cli_version_too_old"
+	"dandi/tests/test_utils.py::test_get_instance_bad_cli_version"
+)
+
 distutils_enable_tests pytest
 
 PATCHES=(
@@ -74,5 +77,5 @@ src_prepare() {
 
 python_test() {
 	export DANDI_TESTS_NONETWORK=1
-	${EPYTHON} -m pytest -vv || die "Tests failed with ${EPYTHON}"
+	epytest
 }

dev-vcs/dandi-cli/dandi-cli-0.35.0.ebuild

@@ -3,7 +3,9 @@
 
 EAPI=8
 
+DISTUTILS_USE_PEP517=setuptools
 PYTHON_COMPAT=( python3_{8..10} )
+
 inherit distutils-r1
 
 DESCRIPTION="DANDI command line client to facilitate common operations"
@@ -14,8 +16,6 @@ LICENSE="Apache-2.0"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test etelemetry"
-#RESTRICT="test"
-# Test fail during collection, reported upstream: https://github.com/dandi/dandi-cli/issues/774
 
 RDEPEND="
 	dev-python/appdirs[${PYTHON_USEDEP}]
@@ -40,14 +40,9 @@ RDEPEND="
 	dev-python/tenacity[${PYTHON_USEDEP}]
 	dev-python/tqdm[${PYTHON_USEDEP}]
 	dev-python/wheel[${PYTHON_USEDEP}]
-	<dev-python/jsonschema-4[${PYTHON_USEDEP}]
 "
-# Errors with newer jsonschema, though not a direct dependency, reported upstream:
-# https://github.com/dandi/dandi-cli/issues/825
-# https://github.com/python-hyper/uritemplate/issues/76
 
 DEPEND="
-	dev-python/setuptools[${PYTHON_USEDEP}]
 	test? (
 		dev-python/anys[${PYTHON_USEDEP}]
 		dev-python/responses[${PYTHON_USEDEP}]
@@ -56,10 +51,20 @@ DEPEND="
 	)
 "
 
+# Some tests require deep copy with git history
+# https://github.com/dandi/dandi-cli/issues/878#issuecomment-1021720299
+EPYTEST_DESELECT=(
+	"dandi/tests/test_utils.py::test_get_instance_dandi_with_api"
+	"dandi/tests/test_utils.py::test_get_instance_url"
+	"dandi/tests/test_utils.py::test_get_instance_cli_version_too_old"
+	"dandi/tests/test_utils.py::test_get_instance_bad_cli_version"
+)
+
 distutils_enable_tests pytest
 
 PATCHES=(
 	"${FILESDIR}/${PN}-0.34.1-pip-versioncheck.patch"
+	"${FILESDIR}/${PN}-0.35.0-test_nonetwork.patch"
 )
 
 src_prepare() {
@@ -74,5 +79,5 @@ src_prepare() {
 
 python_test() {
 	export DANDI_TESTS_NONETWORK=1
-	${EPYTHON} -m pytest -vv || die "Tests failed with ${EPYTHON}"
+	epytest
 }

dev-vcs/dandi-cli/dandi-cli-0.37.0.ebuild

@@ -0,0 +1,87 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{8..10} )
+
+inherit distutils-r1
+
+DESCRIPTION="DANDI command line client to facilitate common operations"
+HOMEPAGE="https://github.com/dandi/dandi-cli"
+SRC_URI="https://github.com/dandi/dandi-cli/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test etelemetry"
+RESTRICT="test"
+# video tests fail:
+# https://github.com/dandi/dandi-cli/issues/944
+
+RDEPEND="
+	dev-python/appdirs[${PYTHON_USEDEP}]
+	dev-python/click[${PYTHON_USEDEP}]
+	dev-python/click-didyoumean[${PYTHON_USEDEP}]
+	~dev-python/dandischema-0.6.0[${PYTHON_USEDEP}]
+	dev-python/fasteners[${PYTHON_USEDEP}]
+	dev-python/fscacher[${PYTHON_USEDEP}]
+	dev-python/humanize[${PYTHON_USEDEP}]
+	dev-python/interleave[${PYTHON_USEDEP}]
+	dev-python/joblib[${PYTHON_USEDEP}]
+	dev-python/keyring[${PYTHON_USEDEP}]
+	dev-python/keyrings_alt[${PYTHON_USEDEP}]
+	dev-python/packaging[${PYTHON_USEDEP}]
+	dev-python/pycryptodomex[${PYTHON_USEDEP}]
+	>=dev-python/pydantic-1.9.0[${PYTHON_USEDEP}]
+	dev-python/pynwb[${PYTHON_USEDEP}]
+	dev-python/pyout[${PYTHON_USEDEP}]
+	dev-python/python-dateutil[${PYTHON_USEDEP}]
+	dev-python/requests[${PYTHON_USEDEP}]
+	dev-python/ruamel-yaml[${PYTHON_USEDEP}]
+	dev-python/semantic_version[${PYTHON_USEDEP}]
+	dev-python/tenacity[${PYTHON_USEDEP}]
+	dev-python/wheel[${PYTHON_USEDEP}]
+	dev-python/zarr[${PYTHON_USEDEP}]
+"
+
+DEPEND="
+	test? (
+		dev-python/anys[${PYTHON_USEDEP}]
+		dev-python/responses[${PYTHON_USEDEP}]
+		dev-python/pyfakefs[${PYTHON_USEDEP}]
+		dev-python/pytest-mock[${PYTHON_USEDEP}]
+		media-libs/opencv[${PYTHON_USEDEP}]
+	)
+"
+
+# Some tests require deep copy with git history
+# https://github.com/dandi/dandi-cli/issues/878#issuecomment-1021720299
+EPYTEST_DESELECT=(
+	"dandi/tests/test_utils.py::test_get_instance_dandi_with_api"
+	"dandi/tests/test_utils.py::test_get_instance_url"
+	"dandi/tests/test_utils.py::test_get_instance_cli_version_too_old"
+	"dandi/tests/test_utils.py::test_get_instance_bad_cli_version"
+)
+
+distutils_enable_tests pytest
+
+PATCHES=(
+	"${FILESDIR}/${PN}-0.37.0-pip-versioncheck.patch"
+)
+
+src_prepare() {
+	if use etelemetry; then
+		default
+	else
+		eapply "${FILESDIR}/${PN}-0.28.0-no-etelemetry.patch"
+		default
+		sed -i "/etelemetry/d" setup.cfg
+	fi
+}
+
+python_test() {
+	export DANDI_TESTS_NONETWORK=1
+	epytest
+}

dev-vcs/dandi-cli/files/dandi-cli-0.35.0-test_nonetwork.patch

@@ -0,0 +1,21 @@
+From e5a6dd4bdc4db828ea1de2a48e96cbdb80465e86 Mon Sep 17 00:00:00 2001
+From: "John T. Wodder II" <git@varonathe.org>
+Date: Tue, 25 Jan 2022 18:53:53 -0500
+Subject: [PATCH] Mark a test with missing `skipif_no_network` marker
+
+---
+ dandi/tests/test_metadata.py | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/dandi/tests/test_metadata.py b/dandi/tests/test_metadata.py
+index 5896e6ef..a0a6bce1 100644
+--- a/dandi/tests/test_metadata.py
++++ b/dandi/tests/test_metadata.py
+@@ -351,6 +351,7 @@ def test_parseobourl(url, value):
+     assert parse_purlobourl(url) == value
+ 
+ 
++@mark.skipif_no_network
+ def test_species():
+     m = {"species": "http://purl.obolibrary.org/obo/NCBITaxon_28584"}
+     assert extract_species(m).json_dict() == {

dev-vcs/dandi-cli/files/dandi-cli-0.37.0-pip-versioncheck.patch

@@ -0,0 +1,13 @@
+--- a/setup.cfg	2021-10-06 11:44:40.549337707 -0400
++++ b/dsetup.cfg	2021-10-06 11:45:10.236935245 -0400
+@@ -30,8 +30,8 @@
+     appdirs
+     click
+     click-didyoumean
+-    dandischema ~= 0.6.0
+-    etelemetry >= 0.2.2
++    dandischema
++    etelemetry
+     fasteners
+     fscacher
+     # Specifying != might be what causes pip 19.3.1 first to install hdmf 1.5.1

dev-vcs/dandi-cli/metadata.xml

@@ -19,4 +19,8 @@
 	<use>
 		<flag name="etelemetry">version checking to respect server schema version</flag>
 	</use>
+	<upstream>
+		<remote-id type="github">dandi/dandi-cli</remote-id>
+		<remote-id type="pypi">dandi</remote-id>
+	</upstream>
 </pkgmetadata>